Difference between revisions of "ProstateNavigation workflow"
From NAMIC Wiki
| Line 20: | Line 20: | ||
* Try to use existing segmentation modules like [http://www.slicer.org/slicerWiki/index.php/Modules:RobustStatisticsSeg-Documentation-3.6 Robust Statistics Segmenter] or [https://www.youtube.com/watch?v=1mYNwJbE7dQ VolumeClip] for quicker prostate segmentation | * Try to use existing segmentation modules like [http://www.slicer.org/slicerWiki/index.php/Modules:RobustStatisticsSeg-Documentation-3.6 Robust Statistics Segmenter] or [https://www.youtube.com/watch?v=1mYNwJbE7dQ VolumeClip] for quicker prostate segmentation | ||
* Evaluate segmentation results by comparing to manual segmentation of trained radiologists (DICE-Coefficient) | * Evaluate segmentation results by comparing to manual segmentation of trained radiologists (DICE-Coefficient) | ||
| − | * Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4 using | + | * Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4 using Landmark Registration Error |
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
Revision as of 20:26, 5 January 2015
Home < ProstateNavigation workflow
Key Investigators
Peter Behringer and Andrey Fedorov
Project Description
Objective
- Design an easy to use GUI for ProstateNavigation (Planning, Registration, Navigation)
- Get Ideas how prostate segmentation can be done quicker, fully automatic in best case
- Validate different pre-op to intra-op registration approaches
Approach, Plan
- Create mockup GUI
- Try to use existing segmentation modules like Robust Statistics Segmenter or VolumeClip for quicker prostate segmentation
- Evaluate segmentation results by comparing to manual segmentation of trained radiologists (DICE-Coefficient)
- Evaluate pre-op to intra-op registration with General Registration (BRAINS) module in Slicer 4.4 using Landmark Registration Error
Progress
- We created a manual describing the workflow steps in the current stage
- Created requirements list containing the core functions of the workflow
