Difference between revisions of "2015 Summer Project Week:Atelectasis Quantification"
From NAMIC Wiki
(Created page with '__NOTOC__ <gallery> Image:PW-Summer2015.png|Projects List Image:Segmentations.png|Screnshot of the Segmentations module </gallery> ==Key In…') |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
<gallery> | <gallery> | ||
Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]] | Image:PW-Summer2015.png|[[2015_Summer_Project_Week#Projects|Projects List]] | ||
| − | Image: | + | Image:AtelectasisQuantification.png|Screnshot of the Atelectasis Quantification module |
</gallery> | </gallery> | ||
==Key Investigators== | ==Key Investigators== | ||
| − | * Ángel Torrado-Carvajal | + | * Ángel Torrado-Carvajal (Universidad Rey Juan Carlos) |
| − | * Carolina Romero | + | * Carolina Romero (Hospital Clínico Universitario de Valencia) |
| − | * Norberto Malpica | + | * Norberto Malpica (Universidad Rey Juan Carlos) |
==Project Description== | ==Project Description== | ||
| Line 17: | Line 17: | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Objective</h3> | <h3>Objective</h3> | ||
| − | * | + | * Develop an easy to use atelectasis quantification tool. |
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | * | + | * Make use of the CIP platform. |
| − | * Create | + | * Create an atelectasis pipeline module GUI (guiding the physician through the process) |
| − | * | + | * Return the actual quantification of healthy lung and atelectasis. |
</div> | </div> | ||
<div style="width: 27%; float: left; padding-right: 3%;"> | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | * | + | * We have identified some issues with the GeneratePartialLungLabelMap CLI in the CIP platform, which is not able to capture all the pathology in the segmentation. Due to this, a new RefineSegmentation CLI should be created. |
| + | * We have started creating a new SegmentAtelectasis CLI in the CIP platform. | ||
| + | * We have created a first draft of the Atelectasis Quantification pipeline, which will be included in the SlicerCIP extension. | ||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 15:28, 24 June 2015
Home < 2015 Summer Project Week:Atelectasis Quantification
Screnshot of the Atelectasis Quantification module
Key Investigators
- Ángel Torrado-Carvajal (Universidad Rey Juan Carlos)
- Carolina Romero (Hospital Clínico Universitario de Valencia)
- Norberto Malpica (Universidad Rey Juan Carlos)
Project Description
Atelectasis is the collapse of part or (much less commonly) all of a lung. It is caused by a blockage of the air passages (bronchus or bronchioles) or by pressure on the outside of the lung. Traditional diagnosis is done performing a 2D measument on one CT slice. In this project we want to compute the actual volumetric spread of the pathology.
Objective
- Develop an easy to use atelectasis quantification tool.
Approach, Plan
- Make use of the CIP platform.
- Create an atelectasis pipeline module GUI (guiding the physician through the process)
- Return the actual quantification of healthy lung and atelectasis.
Progress
- We have identified some issues with the GeneratePartialLungLabelMap CLI in the CIP platform, which is not able to capture all the pathology in the segmentation. Due to this, a new RefineSegmentation CLI should be created.
- We have started creating a new SegmentAtelectasis CLI in the CIP platform.
- We have created a first draft of the Atelectasis Quantification pipeline, which will be included in the SlicerCIP extension.
