Difference between revisions of "2016 Winter Project Week/Projects/DigitalPathologyNuclearSegmentation"
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<!-- Add a bulleted list of investigators and their institutions here --> | <!-- Add a bulleted list of investigators and their institutions here --> | ||
| − | * Erich Bremer - Stony Brook University | + | * Erich Bremer - [https://bmi.stonybrookmedicine.edu/ Stony Brook University] |
| − | * Yi Gao - Stony Brook University | + | * Yi Gao - [https://bmi.stonybrookmedicine.edu/ Stony Brook University] |
| − | * Nicole Aucoin - Brigham and Women's Hospital | + | * Nicole Aucoin - [http://www.brighamandwomens.org/ Brigham and Women's Hospital] |
| − | * Andrey Fedorov - Brigham and Women's Hospital | + | * Andrey Fedorov - [http://www.brighamandwomens.org/ Brigham and Women's Hospital] |
==Project Description== | ==Project Description== | ||
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<!-- Objective bullet points --> | <!-- Objective bullet points --> | ||
| − | * | + | * Create intuitive and user-friendly GUI |
| + | * make meta-data exportable | ||
| + | * Prepare extension for Phase II cloud work and future modules | ||
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<!-- Approach and Plan bullet points --> | <!-- Approach and Plan bullet points --> | ||
| − | * | + | * create work-flow module walking user through needed steps |
| + | * wrap editor module to allow for customization for segmentation purposes without interfering with global editor instance | ||
| + | * capture needed data elements and export them as [http://www.w3.org/TR/json-ld/ JSON-LD] supplementing exporting of masks | ||
| + | * augment GUI by requesting authentication information for [http://oauth.net/2/ OAuth 2.0] and adding elements for image selection via web. | ||
| + | * refactor existing extension modules into separate distinct editor effects modules (currently lumped as one) | ||
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<!-- Progress and Next steps bullet points (fill out at the end of project week --> | <!-- Progress and Next steps bullet points (fill out at the end of project week --> | ||
| − | * | + | * initial work-flow module created |
| + | * editor module wrapped and including in one of the step tabs of the work-flow module | ||
| + | * label mask saved, still need to add additional meta data (algorithm parameters) as JSON-LD export | ||
| + | * username/password entries added to work-flow module for future web authentication | ||
| + | * original single editor-effect refactored into separate effects. Further cleaning of of code needed | ||
| + | * future work - allow image tiles to be select via web interface and resultant label masks and meta data to be exported directly to web services using OAuth2 authenication | ||
| + | * remove unneeded GUI elements and set additional field automatically. Create better tab icons! | ||
| + | * test SlicerPathology with new OpenCV Extension | ||
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| + | [[File:SlicerPathologybeginworkweek2016.png|600px|thumb|left|SlicerPathology extension at the start of Winter Work Week 2016]] | ||
| + | [[File:Afterworkweek.png|600px|thumb|left|SlicerPathology extension at the end of Winter Work Week 2016]] | ||
==Background and References== | ==Background and References== | ||
Latest revision as of 13:56, 8 January 2016
Home < 2016 Winter Project Week < Projects < DigitalPathologyNuclearSegmentation
Key Investigators
- Erich Bremer - Stony Brook University
- Yi Gao - Stony Brook University
- Nicole Aucoin - Brigham and Women's Hospital
- Andrey Fedorov - Brigham and Women's Hospital
Project Description
| Objective | Approach and Plan | Progress and Next Steps |
|---|---|---|
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