Difference between revisions of "Mount Sinai Hospital Workshop"
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=Local Host= | =Local Host= | ||
* Patricia Kovatch, Associate Dean, Scientific Computing, Icahn School of Medicine at Mount Sinai | * Patricia Kovatch, Associate Dean, Scientific Computing, Icahn School of Medicine at Mount Sinai | ||
| − | * [http://www.iacs.stonybrook.edu/people/affiliates/allen-tannenbaum Allen Tannenbaum, Ph.D., Institute for Computational Neuroscience, Stony Brook University | + | * [http://www.iacs.stonybrook.edu/people/affiliates/allen-tannenbaum Allen Tannenbaum, Ph.D.], Institute for Computational Neuroscience, Stony Brook University |
=Tentative Agenda= | =Tentative Agenda= | ||
*9:30-9:40 am Welcome and Goals of the Workshop (Allen Tannenbaum) | *9:30-9:40 am Welcome and Goals of the Workshop (Allen Tannenbaum) | ||
| − | *9:40-10:00 am Introduction to the 3D Slicer software and community | + | *9:40-10:00 am [[media:3DSlicer_2016_SoniaPujol.pdf | Introduction to the 3D Slicer software and community ]] Sonia Pujol |
| − | *10:00-11:00 am Hands-on session 1: 3D Data Loading and Visualization (Sonia Pujol) | + | *10:00-11:00 am [[media:3DDataLoadingandVisualization_Slicer4.5_SoniaPujol.pdf| Hands-on session 1: 3D Data Loading and Visualization]] (Sonia Pujol) |
*11:00-11:15 am Coffee Break | *11:00-11:15 am Coffee Break | ||
| − | *11:15-11:45 am Hands on session 2: Diffusion Tensor Imaging (Sonia Pujol) | + | *11:15-11:45 am [[media: DiffusionMRIanalysisTutorial_Slicer4.5_SoniaPujol.pdf | Hands-on session 2: An Introduction to Diffusion Tensor Imaging]] (Sonia Pujol) |
| − | *11:45-12:20 pm Hands-on session 3: Brain Mapping for Neurosurgery (Sonia Pujol) | + | *11:45-12:20 pm [[media:WhiteMatterExplorationTutorial_Spujol_Slicer4.5.pdf | Hands-on session 3: Brain Mapping for Neurosurgery]] (Sonia Pujol) |
*12:20-12:30 pm Questions from the audience and concluding remarks | *12:20-12:30 pm Questions from the audience and concluding remarks | ||
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**[https://www.dropbox.com/s/ygm8xuybqlu7am9/Slicer-4.5.0-2016-04-11-win-amd64.exe?dl=0 Slicer4.5 (Windows)] | **[https://www.dropbox.com/s/ygm8xuybqlu7am9/Slicer-4.5.0-2016-04-11-win-amd64.exe?dl=0 Slicer4.5 (Windows)] | ||
*Datasets: | *Datasets: | ||
| − | + | **[[Media:3DVisualizationData.zip | 3D Data Loading and Visualization Dataset]] | |
| − | **[[Media:3DVisualizationData.zip | 3D Visualization Dataset | + | **[[Media:Dti_tutorial_data.zip |DTI tutorial Dataset]] |
| − | **[[Media:Dti_tutorial_data.zip | | ||
**[[Media:WhiteMatterExplorationData.zip|White Matter Exploration dataset]] | **[[Media:WhiteMatterExplorationData.zip|White Matter Exploration dataset]] | ||
| + | ** [[Media:3DVisualization DICOM images part1.zip|3D DICOM images]] | ||
Latest revision as of 01:08, 21 April 2016
Home < Mount Sinai Hospital Workshop
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Introduction
The Mount Sinai Hospital workshop is a half-day course that will provide an introduction to the 3D Slicer software for medical image analysis and 3D visualization. The course will cover the basics of how to load and visualize DICOM images in Slicer, and will provide an example of diffusion MRI analysis workflow for surgical planning of tumor resection.
Workshop Organizers
Local Host
- Patricia Kovatch, Associate Dean, Scientific Computing, Icahn School of Medicine at Mount Sinai
- Allen Tannenbaum, Ph.D., Institute for Computational Neuroscience, Stony Brook University
Tentative Agenda
- 9:30-9:40 am Welcome and Goals of the Workshop (Allen Tannenbaum)
- 9:40-10:00 am Introduction to the 3D Slicer software and community Sonia Pujol
- 10:00-11:00 am Hands-on session 1: 3D Data Loading and Visualization (Sonia Pujol)
- 11:00-11:15 am Coffee Break
- 11:15-11:45 am Hands-on session 2: An Introduction to Diffusion Tensor Imaging (Sonia Pujol)
- 11:45-12:20 pm Hands-on session 3: Brain Mapping for Neurosurgery (Sonia Pujol)
- 12:20-12:30 pm Questions from the audience and concluding remarks
Logistics
- Date: Friday April 15, 2016
- Location: Mount Sinai, 150 E. 42nd St, Scientific Computing, 2nd Room 4A-12.
- Registration: To register for the event, please send an e-mail to XXX.
- Workshop Materials: In preparation for the hands-on sessions, please download the following software and datasets:
- Software: 3D Slicer version 4.5:
- Datasets:
