Difference between revisions of "Engineering:2005 Programming Week Results"

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Back to [[Events]]
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==Summary==
 
==Summary==
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The first NA-MIC Programming Week was successfully concluded on July 1, 2005 at MIT. It recorded 44 attendees who worked actively on 22 projects.
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The first NA-MIC Programming Week was successfully concluded on July 1, 2005 at MIT. It recorded 44 attendees who worked actively on 15 projects. A consolidated summary of all projects is available [[Media:2005_Programming_Week_Summary.ppt|here as a ppt]].
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[[Media:2005_Programming_Week_Summary.ppt|Consolidated Summary Slides (ppt) for Programming Week]]
 
  
 
[[Engineering:Programmers_Week_Summer_2005|Link to actual Programming Week Event, MIT Summer, 2005]]
 
[[Engineering:Programmers_Week_Summer_2005|Link to actual Programming Week Event, MIT Summer, 2005]]
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=== Applications ===
 
=== Applications ===
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# [[Media:Prog_week_05_nonrigid_epi_registration_2.ppt|Non Rigid EPI Registration Powerpoint]]: Source in Sandbox  
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# [[Media:Prog_week_05_nonrigid_epi_registration_2.ppt|Non Rigid EPI Registration Powerpoint]]<nowiki>: Source in Sandbox </nowiki>
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# [[Media:Namic-tractanalysis.ppt|Quantitative Fiber Tract Analysis Powerpoint]]: Source in Sandbox, some code incorporated into FiberViewer
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# [[Media:Namic-tractanalysis.ppt|Quantitative Fiber Tract Analysis Powerpoint]]<nowiki>: Source in Sandbox, some code incorporated into FiberViewer </nowiki>
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# [[Media:DLPFCTemplate.ppt| Rule-based DLPFC Segmentation Powerpoint]]: Source in Sandbox
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# [[Media:DLPFCTemplate.ppt| Rule-based DLPFC Segmentation Powerpoint]]<nowiki>: Source in Sandbox </nowiki>
 
  
 
=== Algorithms/Algorithm Infrastructure ===
 
=== Algorithms/Algorithm Infrastructure ===
  
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# [[Media:Slide1.ppt|3D Adaptive Tetrahedral Mesh Generation in ITK]]<nowiki>: Source in sandbox </nowiki>
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# [[Media:Slide1.ppt|3D Adaptive Tetrahedral Mesh Generation in ITK]]: Source in sandbox
 
# [[Media:SlideBlloydnew.ppt|2D/3D Point-Landmark Detection]]
 
# [[Media:SlideBlloydnew.ppt|2D/3D Point-Landmark Detection]]
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# [[Media:ProgWeek05ProjectDescShapeDesc.ppt| Shape Description]]<nowiki>: Source code in sandbox, submission to insight journal soon, some visualization code incorporated back into SOViewer </nowiki>
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# [[Media:ProgWeek05ProjectDescShapeDesc.ppt| Shape Description]]: Source code in sandbox, submission to insight journal soon, some visualization code incorporated back into SOViewer  
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# [[Media:ProgWeek05ProjectDescStatShapeAnalFrame.ppt| Shape Analysis]]<nowiki>: Not yet in coding stage </nowiki>
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# [[Media:ProgWeek05ProjectDescStatShapeAnalFrame.ppt| Shape Analysis]]: Not yet in coding stage  
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# [[Media:BayesianProgWeekProject.ppt| Bayesian Segmentation]]<nowiki>: Source in ITK CVS repository and NAMIC SandBox </nowiki>
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# [[Media:BayesianProgWeekProject.ppt| Bayesian Segmentation]]: Source in ITK CVS repository and NAMIC SandBox  
 
# [[Media:FluxDiffusion.ppt| Flux Diffusion]]
 
# [[Media:FluxDiffusion.ppt| Flux Diffusion]]
  
 
=== Software Infrastructure ===
 
=== Software Infrastructure ===
  
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# [[Media:ITKuProjectPlan.ppt|ITKu| Software Infrastructure: ITKu]]<nowiki>: Source in sourceforge teem repository (itku module: cvs.sourceforge.net:/cvsroot/teem co itku) </nowiki>
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# [[Media:ITKuProjectPlan.ppt|ITKu| Software Infrastructure: ITKu]]: Source in sourceforge teem repository (itku module: cvs.sourceforge.net:/cvsroot/teem co itku)  
 
# [[Media:Namic-nrrdIO.ppt|Software Infrastructure: NRRD IO]]
 
# [[Media:Namic-nrrdIO.ppt|Software Infrastructure: NRRD IO]]
 
# [[Media:Prog_week_dtmri_test.ppt|Software Infrastructure: Slicer DTMRI Nightly Testing]]
 
# [[Media:Prog_week_dtmri_test.ppt|Software Infrastructure: Slicer DTMRI Nightly Testing]]
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# [[Media:ProgWeek05ProjectDescLONI.ppt|Software Infrastructure: LONI Pipeline Integration of UNC Shape Analysis Pipeline]]<nowiki>: LONI example pipelines in Sandbox </nowiki>
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# [[Media:ProgWeek05ProjectDescLONI.ppt|Software Infrastructure: LONI Pipeline Integration of UNC Shape Analysis Pipeline]]: LONI example pipelines in Sandbox  
 
# [[Media:2005_UCSD_ProgrammingWeek-final.ppt|Software Infrastructure: Large Scale Algorithm Job Submission via Condor]]
 
# [[Media:2005_UCSD_ProgrammingWeek-final.ppt|Software Infrastructure: Large Scale Algorithm Job Submission via Condor]]
 
# [[Media:Slicer-architecture-discussion-followup.ppt|Slicer 3.0 Architecture Kickoff]]
 
# [[Media:Slicer-architecture-discussion-followup.ppt|Slicer 3.0 Architecture Kickoff]]

Latest revision as of 18:26, 9 December 2016

Home < Engineering:2005 Programming Week Results

Back to Events

Summary

The first NA-MIC Programming Week was successfully concluded on July 1, 2005 at MIT. It recorded 44 attendees who worked actively on 15 projects. A consolidated summary of all projects is available here as a ppt.

Link to actual Programming Week Event, MIT Summer, 2005

Submissions to Insight Journal

  1. A Quantitative DTI Fiber Tract Analysis Suite
  2. Knowledge-Based Segmentation of Brain MRI Scans Using the Insight Toolkit
  3. Tetrahedral mesh generation for medical imaging
  4. Comparison of Salient Point Detection Methods for 3D Medical Images

One-Slide Summary from Programming Week Projects

Applications

  1. Non Rigid EPI Registration Powerpoint: Source in Sandbox
  2. Quantitative Fiber Tract Analysis Powerpoint: Source in Sandbox, some code incorporated into FiberViewer
  3. Rule-based DLPFC Segmentation Powerpoint: Source in Sandbox

Algorithms/Algorithm Infrastructure

  1. 3D Adaptive Tetrahedral Mesh Generation in ITK: Source in sandbox
  2. 2D/3D Point-Landmark Detection
  3. Shape Description: Source code in sandbox, submission to insight journal soon, some visualization code incorporated back into SOViewer
  4. Shape Analysis: Not yet in coding stage
  5. Bayesian Segmentation: Source in ITK CVS repository and NAMIC SandBox
  6. Flux Diffusion

Software Infrastructure

  1. ITKu| Software Infrastructure: ITKu: Source in sourceforge teem repository (itku module: cvs.sourceforge.net:/cvsroot/teem co itku)
  2. Software Infrastructure: NRRD IO
  3. Software Infrastructure: Slicer DTMRI Nightly Testing
  4. Software Infrastructure: LONI Pipeline Integration of UNC Shape Analysis Pipeline: LONI example pipelines in Sandbox
  5. Software Infrastructure: Large Scale Algorithm Job Submission via Condor
  6. Slicer 3.0 Architecture Kickoff

Additional NA-MIC Engineering Interactions / Benefits

  • Registration
    • Linear and Non-Linear vtkITK Registration Modules Now Available in Slicer
  • I/O
    • vtkITK based Generic Readers in Slicer
    • vtkNRRDReader handles measurement frames, space directions, gradients for DWI
  • fMRI
    • ITK Statistics framework underway
  • Editor
    • Collaboration with Simbios NCBC at Stanford to adapt Slicer Editor for Musculoskeletal MRI
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