Difference between revisions of "2017 Winter Project Week/WhiteMatterAnalysis"
From NAMIC Wiki
| (9 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
<gallery> | <gallery> | ||
Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]] | Image:PW-Winter2017.png|link=2017_Winter_Project_Week#Projects|[[2017_Winter_Project_Week#Projects|Projects List]] | ||
| + | Image:Left CB.png|Left-view Cerebellum | ||
| + | Image:Post CB.png|Posterior-view Cerebellum | ||
| + | Image:Left ParsOp.png|Left-view Pars Opercularis | ||
| + | Image:Sup ParsOp.png|Superior-view Pars Opercularis | ||
| + | |||
<!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --> | <!-- Use the "Upload file" link on the left and then add a line to this list like "File:MyAlgorithmScreenshot.png" --> | ||
</gallery> | </gallery> | ||
| Line 8: | Line 13: | ||
<!-- Add a bulleted list of investigators and their institutions here --> | <!-- Add a bulleted list of investigators and their institutions here --> | ||
* Fan Zhang, BWH | * Fan Zhang, BWH | ||
| + | * Shun Gong, BWH | ||
* Isaiah Norton, BWH | * Isaiah Norton, BWH | ||
* Ye Wu, BWH | * Ye Wu, BWH | ||
| Line 13: | Line 19: | ||
==Project Description== | ==Project Description== | ||
| + | This project is part of the whitematteranalysis software that provides an automated whole brain tractgoraphy registration and segmentation framework. The aim of this project is to integrate a new Slicer module FiberEndpointAnalysis into the whitematteranalysis pipeline. | ||
| + | |||
{| class="wikitable" | {| class="wikitable" | ||
! style="text-align: left; width:27%" | Objective | ! style="text-align: left; width:27%" | Objective | ||
| Line 20: | Line 28: | ||
| | | | ||
<!-- Objective bullet points --> | <!-- Objective bullet points --> | ||
| − | + | Calculate the overlap of fiber tract (endpoint regions) with anatomical parcellation (e.g. freesurfer) or functional region (e.g. fMRI). | |
| − | |||
| | | | ||
<!-- Approach and Plan bullet points --> | <!-- Approach and Plan bullet points --> | ||
| − | * | + | * Release the FiberEndPointFromLabelMap module as part of SandBox in SlicerDMRI. |
| + | * Integrate the module into the whitematteranalysis software. | ||
| + | * Testing and documentation about the new functionality. | ||
| | | | ||
<!-- Progress and Next steps bullet points (fill out at the end of project week) --> | <!-- Progress and Next steps bullet points (fill out at the end of project week) --> | ||
| − | * | + | * Done: Module released in SandBox: https://github.com/SlicerDMRI/Sandbox |
| + | * Done: Integrate EndpointAnalysis into whitematteranalysis: https://github.com/SlicerDMRI/whitematteranalysis | ||
| + | * Done: Documentation: https://github.com/SlicerDMRI/whitematteranalysis/wiki/Running-the-Clustering-Pipeline#commands-to-do-endpoint-analysis | ||
| + | * Done: Testing finished. | ||
|} | |} | ||
==Background and References== | ==Background and References== | ||
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --> | <!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data --> | ||
| − | SlicerDMRI: http://slicerdmri.github.io | + | *SlicerDMRI: http://slicerdmri.github.io |
| − | WhiteMatterAnalysis: https://github.com/SlicerDMRI/whitematteranalysis | + | *WhiteMatterAnalysis: https://github.com/SlicerDMRI/whitematteranalysis |
Latest revision as of 15:53, 13 January 2017
Home < 2017 Winter Project Week < WhiteMatterAnalysis
Left-view Cerebellum
Posterior-view Cerebellum
Left-view Pars Opercularis
Superior-view Pars Opercularis
Key Investigators
- Fan Zhang, BWH
- Shun Gong, BWH
- Isaiah Norton, BWH
- Ye Wu, BWH
- Lauren J. O'Donnell, BWH
Project Description
This project is part of the whitematteranalysis software that provides an automated whole brain tractgoraphy registration and segmentation framework. The aim of this project is to integrate a new Slicer module FiberEndpointAnalysis into the whitematteranalysis pipeline.
| Objective | Approach and Plan | Progress and Next Steps |
|---|---|---|
|
Calculate the overlap of fiber tract (endpoint regions) with anatomical parcellation (e.g. freesurfer) or functional region (e.g. fMRI). |
|
|
Background and References
- SlicerDMRI: http://slicerdmri.github.io
- WhiteMatterAnalysis: https://github.com/SlicerDMRI/whitematteranalysis
