Difference between revisions of "Project Week 25/SlicerCIP Bronchiectasis"

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Back to [[Project_Week_25#Projects|Projects List]]
 
Back to [[Project_Week_25#Projects|Projects List]]
 
  
 
==Key Investigators==
 
==Key Investigators==
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*Pietro Nardelli (Brigham and Women's Hospital, Harvard Medical School, USA)
 
*Pietro Nardelli (Brigham and Women's Hospital, Harvard Medical School, USA)
 
*Jorge Onieva Onieva (Brigham and Women's Hospital, Harvard Medical School, USA)
 
*Jorge Onieva Onieva (Brigham and Women's Hospital, Harvard Medical School, USA)
*Raúl San José Estépar (Brigham and Women's Hospital, Harvard Medical School, USA)
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*[https://lmi.med.harvard.edu/people/raul-san-jose-estepar Raúl San José Estépar] (Brigham and Women's Hospital, Harvard Medical School, USA)
  
 
==Project Description==
 
==Project Description==
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|<!-- Objective bullet points -->
 
|<!-- Objective bullet points -->
The goal of this project is to create a new tool for SlicerCIP that allows to identify bronchiectatic airways on chest CT images in a manual or semi-automatic basis with the help of a customized Slicer Editor module. The tool should allow to compute different measures of the specified airway (area, std dev, mean, etc.) and save them into an xml file along with airway location.
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The goal of this project is to create a new semi-automated tool for SlicerCIP that allows to define bronchiectasis  by means of the airway to vessel ratio. If ratio > 1, then there is bronchiectasis.
  
 
|<!-- Approach and Plan bullet points -->
 
|<!-- Approach and Plan bullet points -->
* Implement a customized Slicer editor module  
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* Implement a customized Slicer editor module to select the region of interest (airway + vessel)
* Implement a tool to compute a set of measures on the identified airway (area, mean, std. dev., etc.)
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* Implement a tool to compute the airway to vessel ratio
* Test with different CT images
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* Use SlicerCIP template to save results
  
 
|<!-- Progress and Next steps (fill out at the end of project week), bullet points -->
 
|<!-- Progress and Next steps (fill out at the end of project week), bullet points -->
 
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* Customized Slicer module to measure airways and vessels by means of rulers created
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* AV ratio is computed and shown to the user
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* The SlicerCIP template is used save results and create PDF report
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* Next step: use circular rulers for better measurement
 
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|}
  
 
==Illustrations==
 
==Illustrations==
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[[File:BronchiectasisModuleExample.png|thumb|center|upright=2.0]]
  
 
==Background and References==
 
==Background and References==
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
 
<!-- Use this space for information that may help people better understand your project, like links to papers, source code, or data -->
SlicerCIP: https://github.com/acil-bwh/SlicerCIP
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*[https://github.com/acil-bwh/SlicerCIP SlicerCIP]

Latest revision as of 23:35, 29 June 2017

Home < Project Week 25 < SlicerCIP Bronchiectasis

Back to Projects List

Key Investigators

  • Pietro Nardelli (Brigham and Women's Hospital, Harvard Medical School, USA)
  • Jorge Onieva Onieva (Brigham and Women's Hospital, Harvard Medical School, USA)
  • Raúl San José Estépar (Brigham and Women's Hospital, Harvard Medical School, USA)

Project Description

Objective Approach and Plan Progress and Next Steps

The goal of this project is to create a new semi-automated tool for SlicerCIP that allows to define bronchiectasis by means of the airway to vessel ratio. If ratio > 1, then there is bronchiectasis.

  • Implement a customized Slicer editor module to select the region of interest (airway + vessel)
  • Implement a tool to compute the airway to vessel ratio
  • Use SlicerCIP template to save results
  • Customized Slicer module to measure airways and vessels by means of rulers created
  • AV ratio is computed and shown to the user
  • The SlicerCIP template is used save results and create PDF report
  • Next step: use circular rulers for better measurement

Illustrations

BronchiectasisModuleExample.png

Background and References