Difference between revisions of "NA-MIC/Projects/Collaboration/UWA-Perth"
From NAMIC Wiki
| (37 intermediate revisions by 4 users not shown) | |||
| Line 1: | Line 1: | ||
{| | {| | ||
|[[Image:ProjectWeek-2008.png|thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page]] ]] | |[[Image:ProjectWeek-2008.png|thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page]] ]] | ||
| − | |[[Image:]] | + | |[[Image:TLED-grabJPG.jpg|thumb|520px|Flow chart of the finite element algorithm with Total Lagrange Explicit Dynamics (TLED) for computing soft organ deformation developed at ISML.]] |
| − | |[[Image:]] | + | |[[Image:ISML.gif]] |
|} | |} | ||
| − | |||
__NOTOC__ | __NOTOC__ | ||
| − | + | <!-- | |
===Instructions for Use of this Template=== | ===Instructions for Use of this Template=== | ||
#Please create a new wiki page with an appropriate title for your project using the convention NA-MIC/Projects/Theme-Name/Project-Name | #Please create a new wiki page with an appropriate title for your project using the convention NA-MIC/Projects/Theme-Name/Project-Name | ||
| Line 13: | Line 12: | ||
#Link the created page into the list of projects for the project event | #Link the created page into the list of projects for the project event | ||
#Delete this section from the created page | #Delete this section from the created page | ||
| − | #Send an email to tkapur at bwh.harvard.edu if you are stuck | + | #Send an email to tkapur at bwh.harvard.edu if you are stuck --> |
===Key Investigators=== | ===Key Investigators=== | ||
| − | * | + | * UWA |
| + | **Karol Miller, [http://www.mech.uwa.edu.au/ISML/ Lab Web pages] | ||
| + | **Adam Wittek | ||
| + | **Grand Joldes | ||
| + | *NAMIC | ||
| + | **Will Schroeder | ||
| + | **Jim Miller | ||
| + | **Steve Pieper | ||
| Line 22: | Line 28: | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
| − | <div style="width: 27%; float: left; padding-right: 3%;"> | + | <div style="width: 27%; float: left; padding-right: 3%;" align="justify"> |
<h1>Objective</h1> | <h1>Objective</h1> | ||
The Intelligent Systems of Medicine Laboratory (ISML) mission is to work towards improving clinical outcomes through appropriate use of technology. We are interested in biomechanics (both engineering biomechanics and sport biomechanics), biomedical engineering, computer integrated surgery, medical robotics and related fields. We run exciting research projects in these areas, generously funded by The Australian Research Council and other agencies (including NIH). | The Intelligent Systems of Medicine Laboratory (ISML) mission is to work towards improving clinical outcomes through appropriate use of technology. We are interested in biomechanics (both engineering biomechanics and sport biomechanics), biomedical engineering, computer integrated surgery, medical robotics and related fields. We run exciting research projects in these areas, generously funded by The Australian Research Council and other agencies (including NIH). | ||
| − | Detailed information about ISML can be found | + | Detailed information about the ISML can be found here [http://www.mech.uwa.edu.au/ISML/] |
</div> | </div> | ||
| − | <div style="width: 27%; float: left; padding-right: 3%;"> | + | <div style="width: 27%; float: left; padding-right: 3%;" align="justify"> |
<h1>Approach, Plan</h1> | <h1>Approach, Plan</h1> | ||
| − | We intend to contribute to Na-MIC by providing | + | We intend to contribute to Na-MIC by providing '''algorithms for computing the intra-operative brain deformations''' for image-guided neurosurgery. We treat the brain shift as a continuum mechanics problem involving finite deformations and solve it using non-linear finite element procedures. We use procedures (non-linear explicit dynamics with Total Lagrangian formulation) that do not require solving large systems of equations and are therefore amenable to computing the intra-operative brain deformations in real time (under 150 s) on a standard PC. See also [http://www.mech.uwa.edu.au/ISML/research.htm] |
</div> | </div> | ||
| − | <div style="width: 40%; float: left;"> | + | <div style="width: 40%; float: left;" align="justify"> |
<h1>Progress</h1> | <h1>Progress</h1> | ||
| + | The algorithms are already implemented in C/C++ using Visual Studio and MFC. Matlab is used for visualizing the results. | ||
| + | |||
| + | <h1>At the Project Week</h1> | ||
| + | *Learned from Jim Miller about possible solutions for linking our Finite Element (FE) solver for computing soft organ deformations with Slicer. No decision regarding selection of such solution has been made. | ||
| + | *Talked with other groups (from the College of William & Mary, Laboratory of Neuro Imaging at UCLA, and the University of Iowa) about applying the FE analysis in computing soft organ deformations for image registration. | ||
| + | *Learned from Vincent Magnotta about the hexahedral mesh generator developed at the University of Iowa. | ||
| + | *Attended the ITK and Non-rigid Registration topic break-outs. | ||
| Line 48: | Line 61: | ||
</div> | </div> | ||
| − | |||
===References=== | ===References=== | ||
| − | *For complete list of our publication visit http://www.mech.uwa.edu.au/ISML/publications.htm | + | *For complete list of our publication visit here [http://www.mech.uwa.edu.au/ISML/publications.htm] |
| − | *[1] Miller, K., Joldes, G., Lance, D., Wittek, A. (2007) Total Lagrangian explicit dynamics finite element algorithm for computing soft tissue deformation, Communications in Numerical Methods in Engineering. Vol. 23, pp. 121-134, doi: 10.1002/cnm.887, available on-line | + | *[1] Miller, K., Joldes, G., Lance, D., Wittek, A. (2007) Total Lagrangian explicit dynamics finite element algorithm for computing soft tissue deformation, Communications in Numerical Methods in Engineering. Vol. 23, pp. 121-134, doi: 10.1002/cnm.887, available on-line [http://www.sciencedirect.com/]. |
| − | *[2] Wittek, A., Miller, K., Kikinis, R., Warfield, S. K. (2007) Patient-specific model of brain deformation: Application to medical image registration. Journal of Biomechanics. Vol. 40, pp. 919-929, DOI:10.1016/j.jbiomech.2006.02.021, available on-line | + | *[2] Wittek, A., Miller, K., Kikinis, R., Warfield, S. K. (2007) Patient-specific model of brain deformation: Application to medical image registration. Journal of Biomechanics. Vol. 40, pp. 919-929, DOI:10.1016/j.jbiomech.2006.02.021, available on-line [http://www.sciencedirect.com/]. |
*[3] Joldes, G. R., Wittek, A., Miller, K. (2007) Suite of finite element algorithms for accurate computation of soft tissue deformation for surgical simulation, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2007, Brisbane, Australia, ISBN 13: 978 0 643 09517 5, pp. 65-73. | *[3] Joldes, G. R., Wittek, A., Miller, K. (2007) Suite of finite element algorithms for accurate computation of soft tissue deformation for surgical simulation, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2007, Brisbane, Australia, ISBN 13: 978 0 643 09517 5, pp. 65-73. | ||
*[4] Hawkins, T., Wittek, A. and Miller, K. (2006) Comparison of constitutive models of brain tissue for non-rigid image registration, in CD Proceedings of 2nd Workshop on Computer Assisted Diagnosis and Surgery, Santiago, Chile, 4 pages. | *[4] Hawkins, T., Wittek, A. and Miller, K. (2006) Comparison of constitutive models of brain tissue for non-rigid image registration, in CD Proceedings of 2nd Workshop on Computer Assisted Diagnosis and Surgery, Santiago, Chile, 4 pages. | ||
*[5] Horton, A., Wittek, A. and K. Miller (2006) Computer simulation of brain shift using an element free Galerkin method, in CD Proceedings of 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 906-911. | *[5] Horton, A., Wittek, A. and K. Miller (2006) Computer simulation of brain shift using an element free Galerkin method, in CD Proceedings of 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 906-911. | ||
| − | *[6] Horton, A., Wittek, A. and K. Miller (2006) Towards meshless methods for surgery simulation. Linear versus non-linear computation of the brain shift, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 32-40 http://www.mech.uwa.edu.au/ISML/publications.htm. | + | *[6] Horton, A., Wittek, A. and K. Miller (2006) Towards meshless methods for surgery simulation. Linear versus non-linear computation of the brain shift, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 32-40, available on-line [http://www.mech.uwa.edu.au/ISML/publications.htm]. |
| − | *[7] Joldes, G., Wittek, A. and Miller, K. (2006) Improved linear tetrahedral element for surgery simulation, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 52-63 | + | *[7] Joldes, G., Wittek, A. and Miller, K. (2006) Improved linear tetrahedral element for surgery simulation, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 52-63, available on-line [http://www.mech.uwa.edu.au/ISML/publications.htm]. |
*[8] Joldes, G., Wittek, A. and Miller, K. (2006) Towards non-linear finite element, computations in real time, in CD Proceedings of 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 894-899. | *[8] Joldes, G., Wittek, A. and Miller, K. (2006) Towards non-linear finite element, computations in real time, in CD Proceedings of 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 894-899. | ||
*[9] Miller, K., Joldes, G. and Wittek, A. (2006) New finite element algorithm for surgical simulation, in CD Proceedings of 2nd Workshop on Computer Assisted Diagnosis and Surgery, Santiago, Chile, 4 pages | *[9] Miller, K., Joldes, G. and Wittek, A. (2006) New finite element algorithm for surgical simulation, in CD Proceedings of 2nd Workshop on Computer Assisted Diagnosis and Surgery, Santiago, Chile, 4 pages | ||
*[10] Miller, K. Hawkins, T. and Wittek, A. (2006) Linear versus non-linear computation of the brain shift, in CD Proceedings of the 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 888-893. | *[10] Miller, K. Hawkins, T. and Wittek, A. (2006) Linear versus non-linear computation of the brain shift, in CD Proceedings of the 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 888-893. | ||
| − | *[11] Miller, K. and Wittek, A. (2006) Neuroimage registration as displacement - zero traction problem of solid mechanics, Lead Lecture in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 1-12 http://www.mech.uwa.edu.au/ISML/publications.htm. | + | *[11] Miller, K. and Wittek, A. (2006) Neuroimage registration as displacement - zero traction problem of solid mechanics, Lead Lecture in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 1-12, available on-line [http://www.mech.uwa.edu.au/ISML/publications.htm]. |
*[12] Wittek, A., Kikinis, K., Warfield, S. K., and Miller, K. (2005) Brain shift computation using a fully nonlinear biomechanical model, in Proceedings of 8th International Conference on Medical Image Computing and Computer Assisted Intervention MICCAI 2005 in Lecture Notes in Computer Science 3750 2006, pp. 583-590. | *[12] Wittek, A., Kikinis, K., Warfield, S. K., and Miller, K. (2005) Brain shift computation using a fully nonlinear biomechanical model, in Proceedings of 8th International Conference on Medical Image Computing and Computer Assisted Intervention MICCAI 2005 in Lecture Notes in Computer Science 3750 2006, pp. 583-590. | ||
In Press | In Press | ||
| − | *[13] | + | *[13] Wittek, A., T. Hawkins, and Miller, K. (2008). On the unimportance of constitutive models in computing brain deformation for image-guided surgery (in press). Biomechanics and Modeling in Mechanobiology: 8 pages, doi: 10.1007/s10237-008-0118-1, Springer. |
*[14] Grand Joldes, Karol Miller and Adam Wittek (2007) Efficient hourglass control implementation for an uniform strain hexahedra using Total Lagrangian formulation. Communications in Numerical Methods in Engineering (accepted in June 2007), 9 pages, doi: 10.1002/cnm.1034, Wiley. | *[14] Grand Joldes, Karol Miller and Adam Wittek (2007) Efficient hourglass control implementation for an uniform strain hexahedra using Total Lagrangian formulation. Communications in Numerical Methods in Engineering (accepted in June 2007), 9 pages, doi: 10.1002/cnm.1034, Wiley. | ||
| − | + | <!-- | |
===Text from Adam's Previous Page=== | ===Text from Adam's Previous Page=== | ||
Back to [[NA-MIC_Collaborations|NA-MIC_Collaborations]], [[Algorithm:Site1|Site1 Algorithms]], [[DBP1:Site2|Site2 DBP 1]] | Back to [[NA-MIC_Collaborations|NA-MIC_Collaborations]], [[Algorithm:Site1|Site1 Algorithms]], [[DBP1:Site2|Site2 DBP 1]] | ||
| Line 84: | Line 96: | ||
= Key Investigators = | = Key Investigators = | ||
| − | * | + | * Karol Miller (kmiller@mech.uwa.edu.au) |
| + | * Adam Wittek | ||
| + | *Grand Joldes | ||
= Publications [http://www.mech.uwa.edu.au/ISML/publications.htm link title]= | = Publications [http://www.mech.uwa.edu.au/ISML/publications.htm link title]= | ||
| Line 103: | Line 117: | ||
''In Press'' | ''In Press'' | ||
| − | *[13] | + | *[13] Wittek, A., T. Hawkins, and Miller, K. (2008). On the unimportance of constitutive models in computing brain deformation for image-guided surgery (in press). Biomechanics and Modeling in Mechanobiology: 8 pages, doi: 10.1007/s10237-008-0118-1, Springer. |
*[14] Grand Joldes, Karol Miller and Adam Wittek (2007) Efficient hourglass control implementation for an uniform strain hexahedra using Total Lagrangian formulation. Communications in Numerical Methods in Engineering (accepted in June 2007), 9 pages, doi: 10.1002/cnm.1034, Wiley. | *[14] Grand Joldes, Karol Miller and Adam Wittek (2007) Efficient hourglass control implementation for an uniform strain hexahedra using Total Lagrangian formulation. Communications in Numerical Methods in Engineering (accepted in June 2007), 9 pages, doi: 10.1002/cnm.1034, Wiley. | ||
| Line 111: | Line 125: | ||
* Link2 | * Link2 | ||
| − | Project Week Results: [[blah|Jan 2006]], [[blah|Jun 2007]] | + | Project Week Results: [[blah|Jan 2006]], [[blah|Jun 2007]] --> |
Latest revision as of 13:41, 30 June 2017
Home < NA-MIC < Projects < Collaboration < UWA-Perth Return to Project Week Main Page |
|
Key Investigators
- UWA
- Karol Miller, Lab Web pages
- Adam Wittek
- Grand Joldes
- NAMIC
- Will Schroeder
- Jim Miller
- Steve Pieper
Objective
The Intelligent Systems of Medicine Laboratory (ISML) mission is to work towards improving clinical outcomes through appropriate use of technology. We are interested in biomechanics (both engineering biomechanics and sport biomechanics), biomedical engineering, computer integrated surgery, medical robotics and related fields. We run exciting research projects in these areas, generously funded by The Australian Research Council and other agencies (including NIH).
Detailed information about the ISML can be found here [1]
Approach, Plan
We intend to contribute to Na-MIC by providing algorithms for computing the intra-operative brain deformations for image-guided neurosurgery. We treat the brain shift as a continuum mechanics problem involving finite deformations and solve it using non-linear finite element procedures. We use procedures (non-linear explicit dynamics with Total Lagrangian formulation) that do not require solving large systems of equations and are therefore amenable to computing the intra-operative brain deformations in real time (under 150 s) on a standard PC. See also [2]
Progress
The algorithms are already implemented in C/C++ using Visual Studio and MFC. Matlab is used for visualizing the results.
At the Project Week
- Learned from Jim Miller about possible solutions for linking our Finite Element (FE) solver for computing soft organ deformations with Slicer. No decision regarding selection of such solution has been made.
- Talked with other groups (from the College of William & Mary, Laboratory of Neuro Imaging at UCLA, and the University of Iowa) about applying the FE analysis in computing soft organ deformations for image registration.
- Learned from Vincent Magnotta about the hexahedral mesh generator developed at the University of Iowa.
- Attended the ITK and Non-rigid Registration topic break-outs.
References
- For complete list of our publication visit here [3]
- [1] Miller, K., Joldes, G., Lance, D., Wittek, A. (2007) Total Lagrangian explicit dynamics finite element algorithm for computing soft tissue deformation, Communications in Numerical Methods in Engineering. Vol. 23, pp. 121-134, doi: 10.1002/cnm.887, available on-line [4].
- [2] Wittek, A., Miller, K., Kikinis, R., Warfield, S. K. (2007) Patient-specific model of brain deformation: Application to medical image registration. Journal of Biomechanics. Vol. 40, pp. 919-929, DOI:10.1016/j.jbiomech.2006.02.021, available on-line [5].
- [3] Joldes, G. R., Wittek, A., Miller, K. (2007) Suite of finite element algorithms for accurate computation of soft tissue deformation for surgical simulation, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2007, Brisbane, Australia, ISBN 13: 978 0 643 09517 5, pp. 65-73.
- [4] Hawkins, T., Wittek, A. and Miller, K. (2006) Comparison of constitutive models of brain tissue for non-rigid image registration, in CD Proceedings of 2nd Workshop on Computer Assisted Diagnosis and Surgery, Santiago, Chile, 4 pages.
- [5] Horton, A., Wittek, A. and K. Miller (2006) Computer simulation of brain shift using an element free Galerkin method, in CD Proceedings of 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 906-911.
- [6] Horton, A., Wittek, A. and K. Miller (2006) Towards meshless methods for surgery simulation. Linear versus non-linear computation of the brain shift, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 32-40, available on-line [6].
- [7] Joldes, G., Wittek, A. and Miller, K. (2006) Improved linear tetrahedral element for surgery simulation, in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 52-63, available on-line [7].
- [8] Joldes, G., Wittek, A. and Miller, K. (2006) Towards non-linear finite element, computations in real time, in CD Proceedings of 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 894-899.
- [9] Miller, K., Joldes, G. and Wittek, A. (2006) New finite element algorithm for surgical simulation, in CD Proceedings of 2nd Workshop on Computer Assisted Diagnosis and Surgery, Santiago, Chile, 4 pages
- [10] Miller, K. Hawkins, T. and Wittek, A. (2006) Linear versus non-linear computation of the brain shift, in CD Proceedings of the 7th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering CMBBE 2006, Antibes, France, ISBN: 0-9549670-2-X, pp. 888-893.
- [11] Miller, K. and Wittek, A. (2006) Neuroimage registration as displacement - zero traction problem of solid mechanics, Lead Lecture in Proceedings of Computational Biomechanics for Medicine Workshop, International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2006, Copenhagen, Denmark, ISBN 10: 87-7611-149-0, pp. 1-12, available on-line [8].
- [12] Wittek, A., Kikinis, K., Warfield, S. K., and Miller, K. (2005) Brain shift computation using a fully nonlinear biomechanical model, in Proceedings of 8th International Conference on Medical Image Computing and Computer Assisted Intervention MICCAI 2005 in Lecture Notes in Computer Science 3750 2006, pp. 583-590.
In Press
- [13] Wittek, A., T. Hawkins, and Miller, K. (2008). On the unimportance of constitutive models in computing brain deformation for image-guided surgery (in press). Biomechanics and Modeling in Mechanobiology: 8 pages, doi: 10.1007/s10237-008-0118-1, Springer.
- [14] Grand Joldes, Karol Miller and Adam Wittek (2007) Efficient hourglass control implementation for an uniform strain hexahedra using Total Lagrangian formulation. Communications in Numerical Methods in Engineering (accepted in June 2007), 9 pages, doi: 10.1002/cnm.1034, Wiley.
