Difference between revisions of "Slicer Training Navigation With Aurora"

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Back to [[3D_Ultrasound_Module_in_Slicer_3|3D_Ultrasound_Module_in_Slicer_3]]
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<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer_Training_Navigation_With_Aurora  here]</font></big>
 
 
===Build IGSTK===
 
'''Download source code'''
 
* Login:
 
  cvs -d :pserver:anonymous@public.kitware.com:/cvsroot/IGSTK login
 
  password: igstk
 
* Check out IGSTK:
 
  cvs -d :pserver:anonymous@public.kitware.com:/cvsroot/IGSTK co IGSTK
 
* Check out IGSTKSandbox:
 
  cvs -d :pserver:anonymous@public.kitware.com:/cvsroot/IGSTK co IGSTKSandbox
 
 
 
'''Compile IGSTK'''
 
* Create a directory named 'IGSTK-build'
 
* Cd to IGSTK-build
 
* Run this command
 
  ccmake ../IGSTK
 
* Set the configuration parameters. For example, here are my settings:
 
BUILD_DOCUMENTATION              OFF
 
BUILD_TESTING                    ON
 
CMAKE_BACKWARDS_COMPATIBILITY    2.4
 
CMAKE_BUILD_TYPE
 
CMAKE_INSTALL_PREFIX            /usr/local
 
DART_ROOT                        DART_ROOT-NOTFOUND
 
EXECUTABLE_OUTPUT_PATH          /home/hliu/projects/igstk/IGSTK-build/bin
 
IGSTK_BUILD_EXAMPLES            ON
 
IGSTK_BUILD_TESTING              ON
 
IGSTK_DEVELOPMENT_VERSION        ON
 
IGSTK_TEST_AURORA_ATTACHED      ON
 
IGSTK_TEST_AURORA_PORT_NUMBER    0
 
IGSTK_TEST_LOOPBACK_ATTACHED    OFF
 
IGSTK_TEST_LOOPBACK_PORT_NUMBE  1
 
IGSTK_TEST_POLARIS_ATTACHED      OFF
 
IGSTK_TEST_POLARIS_PORT_NUMBER  0
 
IGSTK_USE_FLTK                  OFF
 
IGSTK_USE_MicronTracker          OFF
 
IGSTK_USE_Qt                    OFF
 
ITK_DIR                          /home/hliu/projects/Slicer3-lib/Insight-build
 
LIBRARY_OUTPUT_PATH              /home/hliu/projects/igstk/IGSTK-build/bin
 
VTK_DIR                          /home/hliu/projects/Slicer3-lib/VTK-build
 
 
 
* Press "g" to configure the project
 
* Run '''make''' to compile
 
 
 
'''Compile IGSTKSandbox'''
 
* Create a directory named 'IGSTKSandbox-build'
 
* Cd to IGSTKSandbox-build
 
* Run this command
 
  ccmake ../IGSTKSandbox
 
* Set the configuration parameters. For example, here are my settings:
 
'''Compile IGSTK'''
 
* Create a directory named 'IGSTK-build'
 
* Cd to IGSTK-build
 
* Run this command
 
  ccmake ../IGSTK
 
* Set the configuration parameters. For example, here are my settings:
 
BUILD_TESTING                    ON
 
CMAKE_BACKWARDS_COMPATIBILITY    2.4
 
CMAKE_CXX_COMPILER              /usr/bin/g++
 
CMAKE_C_COMPILER                /usr/bin/gcc
 
DOT                              DOT-NOTFOUND
 
EXECUTABLE_OUTPUT_PATH          /home/hliu/projects/igstk/IGSTKSandbox-build/bin
 
FLTK_DIR                        FLTK_DIR-NOTFOUND
 
IGSTKSandbox_BUILD_EXAMPLES      ON
 
IGSTKSandbox_BUILD_SUPERVISED_  OFF
 
IGSTKSandbox_BUILD_TESTING      ON
 
IGSTKSandbox_SEND_TRANSFORMS_T  ON
 
IGSTKSandbox_USE_FLTK            OFF
 
IGSTKSandbox_USE_MicronTracker  OFF
 
IGSTKSandbox_USE_Qt              OFF
 
IGSTK_DIR                        /home/hliu/projects/igstk/IGSTK-build
 
IGSTK_USE_COORDINATE_REFERENCE  ON
 
LIBRARY_OUTPUT_PATH              /home/hliu/projects/igstk/IGSTKSandbox-build/bin
 
MTC_INCLUDE_DIRECTORY            MTC_INCLUDE_DIRECTORY-NOTFOUND
 
MTC_LIBRARY                      MTC_LIBRARY-NOTFOUND
 
 
 
* Press "g" to configure the project
 
* Run '''make''' to compile
 
 
 
===Configure Slicer===
 
Start Slicer 3, and follows these steps: <br>
 
 
 
# create a transform called "tracker" <br>
 
# load a dataset or a moder and make it a child of the "tracker" transform that you just created <br>
 
# Open the Interactor window and from there start the tracker daemon by using the following commands:
 
## source $::SLICER_BUILD/../Slicer3/Modules/TrackerDaemon/Tcl/trackerd.tcl
 
## trackerd_start
 
 
 
===Data communication===
 
Once Slicer is ready waiting for transforms, then do in a console the following command: <br>
 
 
 
  ./igstkSandboxTests igstkTrackerToolObserverToSocketRelayTest localhost 8529 10000 1 1
 
 
 
At that point, the Aurora tracker should be initialized (beeping), and Slicer should popup a message asking for authorization to let somebody connect in "127.0.0.1". If you click on "OK" in that message, then Slicer should start receiving the transforms from the socket, and you should see the volume moving as you move the Tracket tool.
 

Latest revision as of 17:15, 10 July 2017

Home < Slicer Training Navigation With Aurora

Note: We are migrating this content to the slicer.org domain - The newer page is here