Difference between revisions of "CMF Workshop Cleveland 2014"

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This workshop will highlight new developments in publicly available software for image analysis and imaging based research for Dental applications.
 
This workshop will highlight new developments in publicly available software for image analysis and imaging based research for Dental applications.
 
3D image analysis continue to mandate a multidisciplinary collaborative team including clinician researchers, software  engineers and computer science experts.
 
3D image analysis continue to mandate a multidisciplinary collaborative team including clinician researchers, software  engineers and computer science experts.
−
This hands-on workshop for Cranio Maxillo Facial applications will be held  prior to the [http://www.eventbrite.com/e/joint-cephalometric-experts-group-2014-tickets-12027212717?aff=es2&rank=0] at the Bolton Brush Growth Study Center, Cleveland, OH. This work  was supported by the National Institute Of Dental & Craniofacial Research of the National Institutes of Health under Award Number R01DE024450. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health
+
This hands-on workshop for Cranio Maxillo Facial applications will be held  prior to the [http://www.eventbrite.com/e/joint-cephalometric-experts-group-2014-tickets-12027212717?aff=es2&rank=0 Joint Cephalometric Experts Group] at the Bolton Brush Growth Study Center, Cleveland, OH. This work  was supported by the National Institute Of Dental & Craniofacial Research of the National Institutes of Health under Award Number R01DE024450. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health
−
 
 
  
 
==Date and Location==
 
==Date and Location==
 
Wednesday November 5th , 1:00-­‐5:00 pm, at the Case Western Reserve University School of Dental Medicine.
 
Wednesday November 5th , 1:00-­‐5:00 pm, at the Case Western Reserve University School of Dental Medicine.
  
 +
==Workshop  Content==
 +
 +
*1:00 – 2:00pm
 +
 +
- General presentation of the different '''open source dental tools''' [[File:ClevelandPresentation.pdf]] – ''Lucia Cevidanes''
 +
 +
- Presentation '''EasyClip''' – ''Julia Lopinto''
 +
 +
- Presentation '''Angle Measurement''' – ''Julia Lopinto''
 +
 +
- Presentation '''Pick'nPaint''' – ''Lucie Macron''
  
−
==Workshop  Content==
+
- Installation of software: '''ITK-SNAP (version 2.4)''' and '''Slicer-4.3.1'''
 +
 
 +
Problems for the installation of Slicer because a new version was just upload on the website and with this version the extension presented during the workshop can’t be installed.
 +
 
 +
----
 +
 
 +
The different presentations started with a presentation and a demonstration of the use of the tool
 +
The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.
 +
 
 +
*2:00 – 3:00pm
 +
- Dicom files - They are different from the gipl files – ''Lucia Cevidanes''
 +
 
 +
----
 +
 
 +
*3:00 – 3:30pm
 +
- Gipl files – ''Antonio Ruella''
 +
 
 +
----
 +
 
 +
*3:30 – 4:00pm
 +
- Scan already approximated – ''Antonio Ruella''
 +
 
 +
----
 +
 
 +
*4:00 – 4:30pm
 +
- CB segmentation – ''Antonio Ruella''
  
−
WRITE AGENDA HERE, links here also to presentations
+
----
  
 +
*4:30 – 5:00pm
 +
- CB registration – ''Antonio Ruella''
  
 
==Presenters==
 
==Presenters==
  
−
• Lucia Cevidanes, Ph.D. DDS, University of Michigan
+
* '''Lucia Cevidanes''' , ''Ph.D, DDS, University of Michigan''
−
• Antonio C Ruellas, TITLES HERE, University of Michigan
+
luciacev@umich.edu
−
• Liliane de Rosas Gomes, TITLES HERE, University of Michigan
+
 
−
• Marcelo Gomes,TITLES HERE, University of Michigan
+
* '''Antonio Ruella''', ''Ph.D, DDS, MS, University of Michigan''
−
• Julia Lopinto, University of Michigan
+
antonioruellas@yahoo.com.br
−
• Lucie Macron, University of Michigan
+
 
 +
* '''Marcelo Gomes''', ''DDS, MS, University of Michigan''
 +
marceloregisgomes@hotmail.com
 +
 
 +
* '''Liliane Gomes''', ''DDS, MS, PhD student, University of Michigan''
 +
lilianerosas@hotmail.com
 +
 
 +
* '''Marilia Yatabe''', ''DDS, MS, PhD student, University of Michigan''
 +
msyatabe@umich.edu
 +
 
 +
* '''Lucie Macron''', ''Computer Programmer intern, University of Michigan''
 +
luciemac@umich.edu
  
 +
* '''Julia Lopinto''', ''Computer Programmer intern, University of Michigan''
 +
jlop@umich.edu
  
 
==Preparation for the workshop==
 
==Preparation for the workshop==
  
−
??
+
The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.
−
 
+
All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory is required. Shared memory graphics boards have significantly poorer performance.
  
 
==Software==
 
==Software==
−
??
+
[https://na-mic.org/w/images/e/e8/Data_ITKsnap.zip ITKsnap segmentation]
  
 +
[https://na-mic.org/w/images/4/47/Data_Slicer3.zip Slicer4 visualization]
  
 
==Data==
 
==Data==
−
[http://www.na-mic.org/Wiki/images/e/e8/Data_ITKsnap.zip ITKsnap segmentation]
+
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEV0M4eWJEeUhrb3c&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 1: Dicom files - They are different from the gipl files]
 +
 
 +
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEQWJzN29BMnR2WW8&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 2: gipl files]
  
−
[http://www.na-mic.org/Wiki/images/4/47/Data_Slicer3.zip Slicer4 visualization]
+
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEYWE4QWRXUk5JNjg&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 3: Scan already approximated]
  
−
[http://www.slicer.org/slicerWiki/images/c/c1/CMFregData.zip CMFreg registration]
+
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEOEVFWmVRUVpRQWM&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 4: CB segmentation]
  
 +
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESi1pQzVkQWFFckk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5: CB registration]
 +
 +
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESUNRVERaY0JnXzQ&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5a: segm Max and MD T1]
 +
 +
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEWEp3ZWhkYTU4MVk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 6: Models - CB registration]
 +
 +
[https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools]
  
 
==Other Resources==
 
==Other Resources==
Line 56: Line 116:
 
[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed]
 
[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed]
  
−
[http://www.slicer.org/slicerWiki/index.php/Main_Page Slicer user orientation]
+
[https://www.slicer.org/wiki/Main_Page Slicer user orientation]
 +
 
 +
[https://www.slicer.org/wiki/Documentation/4.3/Training Slicer tutorials]
  
−
[http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Training Slicer tutorials]
+
==Participant List==
 +
#Toni Magni
 +
#Vicente Hernandez-Soler
 +
#Anwar Alhazmi
 +
#Bo Amornporncharoen
 +
#Michael Mouroulanos
 +
#Ipsit Patra
 +
#Pritesh Parmar
 +
#Domenico Dalessandri
 +
#Alex Vo
 +
#Manuel Lagravere
 +
#Nicholas Dietrich
 +
#Ahmed Ghoneima
 +
#Mohamed Bazina

Latest revision as of 18:27, 10 July 2017

Home < CMF Workshop Cleveland 2014
NAMIC.jpg CWRU.png MU.jpg UNC uni.jpg

Pre- Joint Cephalometric Experts Imaging Hands-on Workshop

Introduction

This workshop will highlight new developments in publicly available software for image analysis and imaging based research for Dental applications. 3D image analysis continue to mandate a multidisciplinary collaborative team including clinician researchers, software engineers and computer science experts. This hands-on workshop for Cranio Maxillo Facial applications will be held prior to the Joint Cephalometric Experts Group at the Bolton Brush Growth Study Center, Cleveland, OH. This work was supported by the National Institute Of Dental & Craniofacial Research of the National Institutes of Health under Award Number R01DE024450. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health

Date and Location

Wednesday November 5th , 1:00-­‐5:00 pm, at the Case Western Reserve University School of Dental Medicine.

Workshop Content

  • 1:00 – 2:00pm

- General presentation of the different open source dental tools File:ClevelandPresentation.pdf – Lucia Cevidanes

- Presentation EasyClip – Julia Lopinto

- Presentation Angle Measurement – Julia Lopinto

- Presentation Pick'nPaint – Lucie Macron

- Installation of software: ITK-SNAP (version 2.4) and Slicer-4.3.1

Problems for the installation of Slicer because a new version was just upload on the website and with this version the extension presented during the workshop can’t be installed.

The different presentations started with a presentation and a demonstration of the use of the tool The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.

  • 2:00 – 3:00pm

- Dicom files - They are different from the gipl files – Lucia Cevidanes

  • 3:00 – 3:30pm

- Gipl files – Antonio Ruella

  • 3:30 – 4:00pm

- Scan already approximated – Antonio Ruella

  • 4:00 – 4:30pm

- CB segmentation – Antonio Ruella

  • 4:30 – 5:00pm

- CB registration – Antonio Ruella

Presenters

  • Lucia Cevidanes , Ph.D, DDS, University of Michigan

luciacev@umich.edu

  • Antonio Ruella, Ph.D, DDS, MS, University of Michigan

antonioruellas@yahoo.com.br

  • Marcelo Gomes, DDS, MS, University of Michigan

marceloregisgomes@hotmail.com

  • Liliane Gomes, DDS, MS, PhD student, University of Michigan

lilianerosas@hotmail.com

  • Marilia Yatabe, DDS, MS, PhD student, University of Michigan

msyatabe@umich.edu

  • Lucie Macron, Computer Programmer intern, University of Michigan

luciemac@umich.edu

  • Julia Lopinto, Computer Programmer intern, University of Michigan

jlop@umich.edu

Preparation for the workshop

The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory is required. Shared memory graphics boards have significantly poorer performance.

Software

ITKsnap segmentation

Slicer4 visualization

Data

Folder 1: Dicom files - They are different from the gipl files

Folder 2: gipl files

Folder 3: Scan already approximated

Folder 4: CB segmentation

Folder 5: CB registration

Folder 5a: segm Max and MD T1

Folder 6: Models - CB registration

DCBIA Videos - Tutorial videos for the image analysis tools

Other Resources

Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)

SPHARM-PDM publications in PubMed

Slicer user orientation

Slicer tutorials

Participant List

  1. Toni Magni
  2. Vicente Hernandez-Soler
  3. Anwar Alhazmi
  4. Bo Amornporncharoen
  5. Michael Mouroulanos
  6. Ipsit Patra
  7. Pritesh Parmar
  8. Domenico Dalessandri
  9. Alex Vo
  10. Manuel Lagravere
  11. Nicholas Dietrich
  12. Ahmed Ghoneima
  13. Mohamed Bazina
Retrieved from "https://www.na-mic.org/w/index.php?title=CMF_Workshop_Cleveland_2014&oldid=97820"