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| − | Back to [[NA-MIC_Collaborations|NA-MIC_Collaborations]]
| + | <big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:Fluorescence_and_Electron_Microscopy_Support here]</font></big>a |
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| − | '''Objective:''' Incorporate into Slicer our existing microscopy processing and analysis routines, currently being done in Matlab. | |
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| − | '''Progress:'''
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| − | Reading 3-D TIFF images and generating surface models has been easily accomplished.
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| − | * 2007-04-26: Modifying Otsu Segmentation CLM to make use of Connected Components Image Filter.
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| − | ** Works in Linux, not OS X.
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| − | * 2007-04-25: Discussion of relevant steps to accomplish initial astrocyte parsing project.
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| − | ** Using EM Segmentation or 2-D histogram normalization approach to segment immunostaining data.
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| − | ** Need 3-D erosion functionality for 'shrinking' astrocyte image volume to separate into two domains: an outer, "hull", and an inner, "core" domain in which differential protein distributions will be assessed.
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| − | ** Can ParaView be used as visualization tool for surface rendering? Is it faster?
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| − | '''Key Investigators:'''
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| − | * NCMIR/UCSD: W. Bryan Smith, Mark Ellisman
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| − | * Isomics: Steve Pieper
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| − | '''Links:'''
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| − | * Some sample data are available here: [[Image:NCMIR example dataset.zip|NCMIR dataset]]
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| − | '''Screenshot:'''
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| − | [[Image:SlicerAstrocyte.jpg]]
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Latest revision as of 17:48, 10 July 2017
Home < Slicer3:Fluorescence and Electron Microscopy SupportNote: We are migrating this content to the slicer.org domain - The newer page is herea
