Difference between revisions of "Publications"

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__NOTOC__
 
__NOTOC__
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The following publications gratefully acknowledge the support of NA-MIC. Please see [[Publications:NIH_Roadmap_acknowledgement|'''NA-MIC acknowledgement instructions''']] for instructions on how to acknowledge NA-MIC in your publications.
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=NA-MIC Publications=
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The following publications gratefully acknowledge the support of NA-MIC. Please see [[Publications:NIH_Roadmap_acknowledgement|'''instructions''']] on how to acknowledge NA-MIC in your publications.
  
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= '''Search Medline'''=
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==[http://www.na-mic.org/publications/pages/display/?collection=12&entriesPerPage=999999999 Harvard SPL Publications Database]==
  
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The majority of our papers are listed in Medline. Please click the link below to see them.  
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NA-MIC publications are listed in the Harvard SPL Publications Database. Search the [http://www.na-mic.org/publications/pages/display/?collection=12&entriesPerPage=999999999 Harvard SPL Publications Database] for NA-MIC-enabled publications.
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== [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=EB005149 Medline] ==
  
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[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=EB005149 Search Medline for NAMIC-enabled publications]
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Many NA-MIC publications are listed in Medline.  Search [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=EB005149 Medline] for NA-MIC-enabled publications.
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== [http://www.insight-journal.org/search/?search=namic+OR+na-mic+OR+EB005149 The Insight Journal] ==
  
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= '''Search the Insight Journal'''=
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NA-MIC Kit publications appear in the Insight Journal, an NLM supported effort to implement Open Science.  Search [http://www.insight-journal.org/search/?search=namic+OR+na-mic+OR+EB005149 The Insight Journal] for NA-MIC enabled publications.
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[http://www.insight-journal.org/InsightJournalManager/search.php?texte=namic%20OR%20na-mic%20OR%20EB005149&onlysponsors=1 Search the Insight Journal for NA-MIC enabled publications]
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==List of publications from other NCBCs==
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='''Publications not indexed by Medline'''=
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Search Medline for:
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'''Note: Many technical journals are not listed in Medline. Medline therefore only holds a subset of NA-MIC related refereed publications.  The rest of this page contains publications that do not appear in Medline.'''
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#[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=RR021813 CCB-enabled publications]
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#[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=lm008748 I2B2-enabled publications]
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== Peer Reviewed Journal Papers ==
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#[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=gm072970 SIMBIOS-enabled publications]
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#[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=DA021519 NCIBI-enabled publications]
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# Taylor WD, MacFall JR, Gerig G, Krishnan KR. Structural integrity of the uncinate fasciculus in geriatric depression: Relationship with age of onset. In press, Neuropsychiatric Disease and Treatment.
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#[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=CA121852 C2B2-enabled publications]
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# Niethammer M, Vela P, Tannenbaum A. On the evolution of closed curves by means of vector distance functions. Int. Journal Computer Vision, 2006. [[Media:Niethammer_etal_VISI849-04I.pdf| PDF]]
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#[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=HG004028 Bioontology-enabled publications]
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# Niethammer M, Tannenbaum A, Angenent S. Dynamic active contours. IEEE Trans. Automatic Control. 2006; 51:562-579. [[Media:Niethammer_paper1.pdf| PDF]]
 
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# Turner JA, Smyth P, Macciardi F, Fallon JH, Kennedy JL, Potkin SG. Imaging phenotypes and genotypes in schizophrenia. Neuroinformatics. 2006;4(1):21-49. [[Media:Media-Turner_paper.pdf| PDF]]
 
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# Corouge I, Fletcher PT, Sarang J, Gouttard S, Gerig G. Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis. Medical Image Analysis), 768-798. [http://www.cs.unc.edu/~gerig/publications/Corouge-DTI-Original-MedIA-2006.pdf| PDF]
 
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# Martin K, Hoffman B. An Open Source Approach to Developing Software in a Small Organization. IEEE Software. January/February 2007 (Vol. 24, No. 1).
 
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'''''In Press'''''
 
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# Gilmore John H., Lin Weili, Corouge Isabelle, Vetsa Y. Sampath K., Smith J. Keith, Kang Chaeryon, Gu Hongbin, Hamer Robert M., Lieberman Jeffrey A., Gerig Guido, Early Postnatal Development of Corpus Callosum and Corticospinal White Matter Assessed with Quantitative Tractography, accepted AJNR- (American Journal of Neuroradiology), in print
 
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# Nain D, Haker S, Bobick A, Tannenbaum A. "Multiscale 3D Shape Representation and Segmentation using Spherical Wavelets", in press, IEEE Transactions on Medical Imaging Special issue on Computational Anatomy.
 
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# Liu T, Young G, Huang L, Chen N-K, Wong S. “76-space Analysis of Grey Matter Diffusivity: Methods and Applications,” in press, NeuroImage.
 
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# O’Donnell L, Kubicki M, Shenton ME, Dreusicke MH, Grimson WEL, Westin CF. A method for clustering white matter fiber tracts. AJNR (In Press).
 
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# Koo MS, Levitt JJ, McCarley RW, Seidman LJ, Dickey CC, Niznikiewicz MA, Voglmaier MM, Zamani P, Long KL, Kim SS, Shenton ME. Reduction of caudate volume in neuroleptic-naive female subjects with schizotypal personality disorder. Biol Psychiatry (In Press).
 
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# Kuroki N, Kubicki M, Nestor PG, Salisbury DF, Park HJ, Levitt JJ, Woolston S, Frumin M, Niznikiewicz M, Westin CF, Maier SE, McCarley RW, Shenton ME. Fornix integrity and hippocampal volume in male schizophrenic patients. Biol Psychiatry (In Press).
 
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# Onitsuka T, Niznikiewicz MA, Spencer KM, Frumin M, Kuroki N, Lucia LC, Shenton ME, McCarley RW. Schizophrenia is associated with functional and structural deficits in brain regions subserving face processing. Am J Psychiatry (In Press).
 
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# Niethammer M, Tannenbaum A, Kalies W, Mischaikow K. Detecting simple points in higher dimensions. IEEE Image Processing, 2006. (In Press).
 
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# Rathi Y, Dambreville S, Tannenbaum A. Comparative analysis of kernel methods for statistical shape learning. CVAMIA'06, 2006. (In Press).
 
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# Roth RM, Koven, NS, Randolph JJ, Flashman LA, Pixley HS, Ricketts SM, Wishart HA, Saykin AJ. Event-Related fMRI study of Functional magnetic resonance imaging of executive control in bipolar disorder. NeuroReport, 2006 (In Press).
 
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# Pohl KM, Fisher J, Grimson WEL, Kikinis R, Wells WM. [[Media:Pohl-ni-2006.pdf| A bayesian model for joint segmentation and registration.]] NeuroImage, 2006 (In Press).
 
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# Fletcher PT, Joshi S. Riemannian Geometry for the Statistical Analysis of Diffusion Tensor Data. Signal Processing, 2006. (In Press).
 
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== Peer Reviewed Conference Proceedings ==
 
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'''Conferences included here represent the major high quality conferences in medical image analysis (MICCAI, IPMI, MMBIA, ISBI). These conferences only accept submission of full papers and guarantee a peer review process by at least three reviewers and an area chair. Acceptance rates are below 40% for MICCAI, IPMI and MMBIA and around 50% for ISBI.'''
 
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# Goodlett, Casey , Fletcher, P. Thomas , Lin, Weili , and Gerig, Guido, "Quantification of measurement error in DTI: Theoretical predictions and validation", in print MICCAI 2007, to appear Nov. 2007
 
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# M. Maddah, W. M. Wells, S. K. Warfield, C.-F. Westin, and W. E. L. Grimson, Probabilistic Clustering and Quantitative Analysis of White Matter Fiber Tracts, IPMI 2007, Netherlands.
 
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# Styner M, Xu SC, El-Sayed M, Gerig G, Correspondence Evaluation in Local Shape Analysis and Structural Subdivision, IEEE Symposium on Biomedical Imaging ISBI 2007, in print
 
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# Zhou C, Park DC, Styner M, Wang YM, ROI Constrained Statistical Surface Morphometry, IEEE Symposium on Biomedical Imaging ISBI 2007, in print
 
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# D. Nain, M. Styner, M. Niethammer, J. J. Levitt, M E Shenton, G Gerig, A. Bobick, A. Tannenbaum. Statistical Shape Analysis of Brain Structures using Spherical Wavelets. Accepted in The Fourth IEEE International Symposium on Biomedical Imaging (ISBI ’07), April 12-15, 2007, Washington DC, USA.
 
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# Kim S, Smyth P. Hierarchical Dirichlet processes with random effects. Advances in Neural Information Processing Systems 19, to appear, 2006. [[Media:Nips_hMDP_RE.pdf| PDF ]]
 
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# Kim S, Smyth P, Stern H. A nonparametric Bayesian approach to detecting spatial activation patterns in fMRI data. To appear in MICCAI, Oct 2-5, 2006.[[Media:InfMM_miccai.pdf| PDF ]]
 
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# Nain D, Haker S, Bobick A, Tannenbaum A. Shape-driven surface segmentation using spherical wavelets. MICCAI, LNCS 4190, Oct 2-5, 2006.
 
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# Goodlett C, Davis B, Jean R, Gilmore J, Gerig G. Improved Correspondence for DTI Population Studies via Unbiased Atlas Building. Proceedings of MICCAI, 2006. [[Media:Goodlett-miccai06.pdf| PDF]]
 
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# Styner M, Jomier M, Gerig G: Closed and Open Source Neuroimage Analysis Tools and Libraries at UNC. IEEE Symposium on Biomedical Imaging ISBI. 2006; 702-705. [[Media:ISBI06_Neurolib.pdf| PDF ]]
 
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# M. Maddah, W. E. L. Grimson, and S. Warfield, Statistical Modeling and EM Clustering of White Matter Fiber Tracts, ISBI 2006: IEEE 2006 International Symposium on Biomedical Imaging, Arlington, VA, April 6-9, 2006
 
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# Gerig G, Joshi S, Fletcher T, Gorczowski K, Xu S, Pizer SM, Styner M. Statistics of populations of images and its embedded objects: Driving applications in neuroimaging. IEEE Symposium on Biomedical Imaging ISBI. 2006; 1120-1123.[[Media:ISBI06-GerigShape.pdf| PDF]]
 
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# Pieper S, Lorensen W, Schroeder W, Kikinis R. [[Media:Pieper-ISBI-2006-revised.pdf| The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as An Open Platform for the Medical Image Computing Community.]] IEEE Symposium on Biomedical Imaging ISBI. 2006; 698-701.
 
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# Pichon E, Westin CF, and Tannenbaum A. A Hamilton-Jacobi-Bellman approach to high angular diffusion tractography. Proceedings of MICCAI, 2005. [[Media:Pichon-miccai05.pdf| PDF]]
 
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# Yang Y, Zhu L, Haker S, Tannenbaum A. On the harmonic skeleton and vessel data. Proceeedings of MICCAI, 2005. [[Media:YangMICCAI2005.pdf| PDF]]
 
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# Styner M, Gimpel Smith R, Cascio C, Oguz I, Jomier M. Corpus Callosum Subdivision based on a Probabilistic Model of Inter-hemispheric Connectivity. Medical Image Computing and Computer Assisted Interventions MICCAI. 2005 LNCS 3750;765-772. [[Media:MICCAI05CCSubdiv.pdf| PDF]]
 
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# Liu T, Young G, Huang L, Chen N-K, Wong S. “76-space Analysis of Grey Matter Diffusivity: Methods and Applications,” MICCAI 2005.[[Media:MICCAI-2005--461-Liu.pdf| PDF]]
 
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# Pichon E, Tannenbaum A. Curve segmentation using directional information, relation to pattern detection. Proc IEEE International Conference on Image Processing (ICIP), 2005
 
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# Nain D, Haker S, Bobick A, Tannenbaum A. [[Media:Nain.miccai2005.pdf| Multiscale 3D Shape Analysis using Spherical Wavelets]]. Proc MICCAI, LNCS 3750, Oct 26-29 2005; p 459-467.
 
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# Corouge I, Fletcher PT, Joshi S, Gilmore JH, Gerig G. [[Media:Corouge-miccai-2005.pdf| Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis.]] Proc. MICCAI, Oct 26-29 2005; LNCS 3749, pp. 131-139
 
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# Ou W, Golland P. From Spatial Regularization to Anatomical Priors in fMRI Analysis. Proc IPMI, Jul 10-15 2005; LNCS 3565: p 88-100. [[Media:OuGolland_IPMI2005.pdf| PDF]]
 
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# Pohl KM, Fisher J, Levitt JJ, Shenton ME, Kikinis R, Grimson WEL, Wells WM. [[Media:Pohl-miccai-2005.pdf| A Unifying Approach to Registration, Segmentation, and Intensity Correction,]] In Proc. MICCAI 2005: Eigth International Conference on Medical Image Computing and Computer Assisted Intervention, Palm Springs, CA, USA, Springer-Verlag, Part I, vol. 3749 of Lecture Notes in Computer Science, pp. 310-318, 2005
 
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# Pohl KM, Bouix S, Shenton ME, Grimson WEL, Kikinis R. [[Media:Pohl-miccai-short-2005.pdf| Automatic Segmentation Using Non-Rigid Registration,]] In short communications of MICCAI 2005: Eighth International Conference on Medical Image Computing and Computer Assisted Intervention, Palm Springs, CA, USA, 2005
 
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# Martin-Fernandez M, Bouix S, Ungar L, McCarley RW, Shenton ME. Two Methods for Validating Brain Tissue Classifiers. MICCAI 2005, Palm Springs, CA, USA: Duncan J and Gerig G (Eds.): Lecture Notes in Computer Science, volume 3749, pp 515-522, 2005. Springer-Verlag Berlin Heidelberg, 2005. [[Media:Martin-fernandezMICCAI05.pdf| PDF]]
 
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# Kim S, Smyth P, Stern H, Turner J. Parametric response surface models for analysis of multi-site fMRI data. In Proc. MICCAI 2005: Eighth International Conference on Medical Image Computing and Computer Assisted Intervention, Palm Springs, CA, USA, Springer-Verlag, Part I, vol. 3749 of Lecture Notes in Computer Science, pp. 352-359, 2005. [[Media:Seyoung-official.pdf|PDF]]
 
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# O'Donnell L, Westin C-F. White Matter Tract Clustering and Correspondence in Populations. MICCAI 2005, Palm Springs, CA, USA: Duncan J, Gerig G (Eds.): Lecture Notes in Computer Science, volume 3749, pp 140-147, 2005. Springer-Verlag Berlin Heidelberg, 2005. [[Media:OdonnellMICCAI05.pdf| PDF]]
 
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# M. Maddah, A. Mewes, S. Haker, W. E. L. Grimson, and S. Warfield, Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI. MICCAI05, Palm Spring, CA,: Lecture Notes in Computer Science, volume 3749, pp. 188-195, 2005.
 
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== Book Chapters ==
 
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# Nain D, Tannenbaum A, Unal G, Yezzi A, Zeitouni O. On a stochastic model of geometric snakes. Mathematical Methods in Computer Vision: A Handbook, edited by Faugeras O, Paragios N, Springer-Verlag, 2005.
 
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# Angenent S, Tannenbaum A, Yezzi A, Zeitouni O. Curve shortening and interacting particle systems. Book chapter in a volume edited by Hamid Krim, 2005.
 
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== Conferences and Workshops ==
 
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# Goodlett C, Fletcher PT, Lin W, and Gerig G. Noise-induced bias in low-direction diffusion tensor MRI: Replication of Monte-Carlo simulation with in-vivo scans. Accepted ISMRM 2007.
 
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# M. Styner, I. Oguz, S. Xu, D. Pantazis, and G. Gerig. Statistical group differences in anatomical shape analysis using hotelling T2 metric. Proc SPIE Medical Imaging Conference, in print, 2007.
 
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# Rathi Y, Olver P, Sapiro G, Tannenbaum A. Affine Invariant Surface Evolutions for 3D Image Segmentation, SPIE 2006
 
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# Rathi Y, Dambreville S, Tannenbaum A. Comparative Analyis of Kernel Methods for Statistical Shape Learning, 2nd Workshop on Computer Vision Approaches to Medical Image Analysis (in conjunction with ECCV) 2006.
 
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# Eric Pichon, Delphine Nain, and Marc Niethammer. [[Media:Pichon-SPIEMI2006-laplace.pdf| A Laplace Equation Approach for Shape Comparison]]. Proc SPIE Medical Imaging, 2006.
 
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# Al-Hakim R, Fallon J, Nain D, Melonakos J, Tannenbaum A. [[Media:Dlpfc-SPIE2006-full.pdf| A Dorsolateral Prefrontal Cortex Semi-Automatic Segmenter]]. Proc SPIE Medical Imaging, 2006.
 
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# Pohl KM, Fisher J, Kikinis R, Grimson WEL, Wells WM. [[Media:Pohl-iccv-ws-2005.pdf| Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images,]] In Proc. ICCV 2005: Computer Vision for Biomedical Image Applications: Current Techniques and Future Trend, An International Conference on Computer Vision Workshop, Beijing, China, Springer-Verlag, vol. 3765 of Lecture Notes in Computer Science, 2005
 
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# Zöllei L, Learned-Miller E, Grimson WEL, Wells WM III. Efficient Population Registration of 3D Data. Proc ICCV 2005, Computer Vision for Biomedical Image Applications; Beijing, China
 
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# Angenent S, Pichon E, Tannenbaum A. Mathematical methods in medical imaging. Bulletin of American Mathematical Association, 2006.
 
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# O'Donnell L, Westin C-F. A High-Dimensional Fiber Tract Atlas. accepted to ISMRM 2006.
 
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# Zöllei L, Wells WM III. Multi-modal Image Registration Using Dirichlet-encoded Prior Information. oral presentation at WBIR06
 
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# Fletcher PT, Whitaker RT. Riemannian Metrics on the Space of Solid Shapes. accepted to MICCAI'06 Workshop on Mathematical Foundations of Computational Anatomy (MFCA).
 
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# Cates J, Meyer M, Fletcher PT, Whitaker R. Entropy-Based Particle Systems for Shape Correspondence. accepted to MICCAI'06 Workshop on Mathematical Foundations of Computational Anatomy (MFCA).
 
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== Submitted and in Preparation ==
 
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# Flashman LA, Roth RM, Pixley HS, Cleavinger HB, Saykin AJ, McAllister TW, Vidaver RM. (submitted). Cavum septum pellucidum in schizophrenia: Clinical and neuropsychological correlates.
 
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# Szymczak A, Tannenbaum A, Stillman A, Mischaikow K. Vessel cores from 3D imagery: a topological approach. submitted to IEEE Trans. Medical Imaging, 2006.
 
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# Michailovich O, Tanenbaum A. Fast approximation of smooth functions from samples of partial derivatives. Submitted for publication to IEEE Signal Processing, 2006.
 
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# Zhu L, Yang Y, Haker S, and Tannenbaum A. An image morphing technique based on optimal mass preserving mapping. Submitted to IEEE Trans. Medical Imaging, 2006.
 
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# Rathi Y, Vaswani N, Tannenbaum A, Yezzi Y. Tracking Deforming Objects using Particle Filtering for Geometric Active Contours. Submitted to IEEE PAMI, 2005.
 
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# Rathi Y, Tannenbaum A. Kernel PCA for shape based segmentation of medical images. submitted to MICCAI, 2006.
 
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# Gorczowski K, Gerig G, Fletcher T, Pizer SM, Styner M. Statistics of Pose and Shape in Multi-Object Complexes using Principal Geodesic Analysis. submitted to MICCAI, 2006.
 
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# Gribbin M, Clement M, Muller K, Poe M, Cascio C, Jomier M, Piven J, Gerig G. Statistical analysis of diffusion tensor image data based on first principles, submitted MICCAI'06, March 2006
 
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# Flashman LA, Roth RM, Koven NS, McAllister TW, Vidaver RM, Pendergrass JC. Neural Correlates of Self-Evaluation in Individuals with Schizophrenia. in preparation.
 
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# Basu S, Fletcher PT, Whitaker RT. Rician Noise Removal in Diffusion Tensor MRI, to appear MICCAI'06.
 
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# Han X, Fischl B. Intensity Renormalization for Improved Brain MR Image Segmentation across Scanner Platforms, submitted to IEEE Transactions on Medical Imaging.
 
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# Yu P, Grant P, Qi Y, Han X, Ségonne F, Pienaar R, Busa E, Pacheco J, Makris N, Buckner R, Golland P, Fischl B. Cortical Surface Shape Analysis Based on Spherical Wavelets, submitted to IEEE Transactions on Medical Imaging
 
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# Ségonne F, Pacheco J, Fischl B. Geometrically-Accurate Topology-Correction of Cortical Surfaces using Non-Separating Loops, submitted to IEEE Transactions on Medical Imaging
 
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# Voineskos AN, Zai G, Bulgin N, Shaikh S, Lang D, Honer WG, Kennedy JL. MAG but not CNP Gene Associated with Total Brain White Matter. In Preparation. Presented in Part at World Congress of Psychiatric Genetics Annual Meeting. October, 2006.
 
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==List of publications from other NCBCs:==
 
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# [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=RR021813 Search Medline for CCB-enabled publications]
 
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# [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=lm008748 Search Medline for I2B2-enabled publications]
 
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# [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=gm072970 Search Medline for SIMBIOS-enabled publications]
 
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# [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=DA021519 Search Medline for NCIBI-enabled publications]
 
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# [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=CA121852 Search Medline for C2B2-enabled publications]
 
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# [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?CMD=search&DB=pubmed&term=HG004028 Search Medline for Bioontology-enabled publications]
 

Latest revision as of 16:01, 14 March 2017

Home < Publications

NA-MIC Publications

The following publications gratefully acknowledge the support of NA-MIC. Please see instructions on how to acknowledge NA-MIC in your publications.

Logo spl.gif

Harvard SPL Publications Database

NA-MIC publications are listed in the Harvard SPL Publications Database. Search the Harvard SPL Publications Database for NA-MIC-enabled publications.

Pubmed.jpg

Medline

Many NA-MIC publications are listed in Medline. Search Medline for NA-MIC-enabled publications.

IJLogo2.gif

The Insight Journal

NA-MIC Kit publications appear in the Insight Journal, an NLM supported effort to implement Open Science. Search The Insight Journal for NA-MIC enabled publications.

List of publications from other NCBCs

Search Medline for:

  1. CCB-enabled publications
  2. I2B2-enabled publications
  3. SIMBIOS-enabled publications
  4. NCIBI-enabled publications
  5. C2B2-enabled publications
  6. Bioontology-enabled publications
Retrieved from "https://www.na-mic.org/w/index.php?title=Publications&oldid=95323"