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− | ===QueryAtlas===
| + | <big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:Module:QueryAtlas here]</font></big> |
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− | {|
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− | |[[Image:QAsearch.png|thumb|280px|Caption 1]]
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− | [[ Media:QA_Presentation.zip | Slides and movie]] from April07 fBIRN meeting
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− | [[ Media:QueryAtlas-AHM2007.ppt | Slides ]] for Oct07 BIRN meeting
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− | == General Information ==
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− | ===Module Type & Category===
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− | Type: Interactive
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− | Category: N/A
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− | ===Authors & Collaborators ===
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− | Steve Pieper, Greg Brown, David Kennedy, Maryanne Martone, Jyl Boline, Burak Ozyurt,Wendy Plesniak, Michael Halle, Anna Tang, and Florin Talos
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− | ===Module Description===
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− | The QueryAtlas module can be used to:
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− | * Load volumetric analyses from XCEDE compliant or XNAT databases;
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− | * Visualize volumes, models and parametric map overlays.
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− | * Annotate models and labelmaps with atlas-based anatomy labels
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− | * Map those local anatomy names to symantically compatible terms used in the larger biomedical informatics (neuroinformatics) community
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− | * Formulate queries in the context of particular study results (fMRI activations or group statistics, for example)
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− | * View, manage and save collections of query results
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− | == Usage ==
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− | ===Example data===
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− | Download FIPS/FreeSurfer Xcede catalog example data: [[ media:QueryAtlasExampleData.zip | QueryAtlasExampleData.zip ]].
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− | Download Qdec (XNAT) example data: [http://www.na-mic.org/Slicer/Download/Data/TEST4.qdec TEST5.qdec ].
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− | ===Quick Tour of Features and Use===
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− | List all the panels in your interface, their features, what they mean, and how to use them. For instance:
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− | * '''Input panel:'''
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− | * '''Parameters panel:'''
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− | * '''Output panel:'''
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− | * '''Viewing panel:'''
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− | == Development ==
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− | ===Dependencies===
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− | Other modules or packages that are required for this module's use.
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− | ===Known bugs===
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− | Follow this link to the Slicer3 bug tracker:
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− | http://na-mic.org/Mantis/main_page.php
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− | ===Usability issues===
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− | Follow this link to the Slicer3 bug tracker. Please select the '''usability issue category''' when browsing or contributing:
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− | http://na-mic.org/Mantis/main_page.php
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− | ===Source code & documentation=== | |
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− | Customize following links for your module:
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− | http://www.na-mic.org/ViewVC/index.cgi/
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− | Links to documentation generated by doxygen:
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− | http://www.na-mic.org/Slicer/Documentation/Slicer3/html/
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− | == More Information ==
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− | ===Acknowledgement===
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− | This research was supported by Grant 5 MOI RR 000827 to the FIRST BIRN and Grant 1 U24 RR021992 to the FBIRN Biomedical Informatics Research Network (BIRN, http://www.nbirn.net), that is funded by the National Center for Research Resources (NCRR) at the National Institutes of Health (NIH). This work was also supported by NA-MIC, NAC, NCIGT. NeuroNames ontology and URI resources are provided courtesy of BrainInfo, University of Washington.
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− | ===References===
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− | Publications related to this module go here. Links to pdfs would be useful.
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