Difference between revisions of "IGT:ToolKit"

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The wiki pages here present the tool kit we are using or developing at Brigham and Women's Hospital for the purpose of image guided therapy (IGT). The IGT kit is a set of open source software tools with supported hardware devices. We encourage you download and use the free tools if you find them useful to you and welcome any comments or feedback from your expereince.
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__NOTOC__
  
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==='''Tools'''===<br>
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The '''Image Guided Therapy Toolkit''' is a toolkit being developed at the Brigham and Women's Hospital.  The IGT toolkit is a set of open source software tools integrated with supported hardware devices: [http://www.slicer.org www.slicer.org 3D Slicer] is our main platform for software development and dissemination, and
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[http://www.na-mic.org/Wiki/index.php/OpenIGTLink OpenIGTLink] is a communication protocol that allows Slicer3 to communicate with imaging devices, trackers and medical robots. We encourage you to download and use the free tools and welcome any comments or feedback.
  
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;[http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Robot Robot Control Toolkit]
 
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;[http://www.na-mic.org/Wiki/index.php/IGT:ToolKit/Slicer-IGT Slicer IGT]
 
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;[http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/IGSTK IGSTK]
 
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;[http://www.na-mic.org/Wiki/index.php/OpenIGTLink Open IGT Link]
 
  
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==='''Example Projects with Source Code'''===<br>
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='''Tutorials'''=
  
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;[http://wiki.na-mic.org/Wiki/index.php/IGT-Tool-Kit/Navigation-With-Tracker Navigation System with Tracker]
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See the [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training Slicer3 Training page] for additional tutorials on Slicer3 capabilities.
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;[http://wiki.na-mic.org/Wiki/index.php/IGT-Tool-Kit/Navigation-With-Robot Navigation System with Robot]
 
  
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==='''IGT Tutorials'''===<br>
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{| border="1" cellpadding="5"
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|- style="background:#BBE9E2; color:black" align="left"
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| style="width:5%" | '''Level'''
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| style="width:45%" | '''Tutorial'''
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| style="width:20%" | '''Hardware Requirements'''
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| style="width:10%" | '''Tutorial'''
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|-
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| style="background:#9BF2C5; color:black" align="Center"| '''1'''
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| style="background:#D1FFF9; color:black"| [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Navigation-tutorial Basic Navigation Tutorial]
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Illustrates Slicer3's tracking capabilities using a tracking simulator in place of an actual tracking device
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| style="background:#D1FFF9; color:black"| None
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| style="background:#C3D1C3; color:black" align="Center"|
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[[Image:IGTBasicNavigationSummary.png|200px|Basic Navigation]]
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|-
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| style="background:#9BF2C5; color:black" align="Center"| '''1'''
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| style="background:#D1FFF9; color:black"| [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Neurosurgical-Planning Neurosurgical Planning in Slicer3]
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Demonstrate's Slicer3's IGT capabilities by using image registration, model making and DTI to create a preoperative plan for neurosurgery
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| style="background:#D1FFF9; color:black"| None
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| style="background:#C3D1C3; color:black" align="Center"| [[Image:NeurosurgicalPlanningOverview.png|200px|Neurosurgical Planning Overview]]
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|-
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| style="background:#9BF2C5; color:black" align="Center"| '''1'''
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| style="background:#D1FFF9; color:black"| [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Prostate-Planning Prostate Therapy Planning in Slicer3]
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Demonstrates Slicer3's IGT capabilities by using deformable registration and model making to create a preoperative plan for prostate therapy
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| style="background:#D1FFF9; color:black"| None
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| style="background:#C3D1C3; color:black" align="Center"|
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[[Image:ProstatePlanningOverview.jpg|200px|Prostate Planning Overview]]
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|-
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| style="background:#9BF2C5; color:black" align="Center"| '''1'''
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| style="background:#D1FFF9; color:black"| [http://wiki.na-mic.org/Wiki/index.php/LEGO_IGT_and_Medical_Robotics_Tutorial Lego IGT and Medical Robotics Tutorial]
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Provides an overview of all of the main components of IGT and medical robotics, including imaging, pre-operative planning, targetting by tracking, navigation and registration
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| style="background:#D1FFF9; color:black"| Lego Mindstorms NXT robot
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Lego Deluxe Brick Box
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| style="background:#C3D1C3; color:black" align="Center"| [[Image:Slicer3-IGT-LEGOTutorial-biopsy.jpg|200px|Lego Tutorial]]
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|-
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| style="background:#8EDEB5; color:black" align="Center"| '''2'''
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| style="background:#D1FFF9; color:black"| [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Navigation-with-Aurora Advanced Navigation Tutorial with a tracking device]
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Illustrates Slicer3's tracking capabilities using a tracking device, and provides a more advanced overview of the OpenIGTLink protocol
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| style="background:#D1FFF9; color:black"| Tracking device e.g. NDI Aurora
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| style="background:#C3D1C3; color:black" align="Center"| [[Image:AdvancedNavigationTutorialSummary.png|200px|Advanced Navigation Tutorial]]
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|}
  
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;[http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Datasets IGT Datasets]
 
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;[http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Get-Slicer-IGT Install Slicer3]
 
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;[http://wiki.na-mic.org/Wiki/index.php/Slicer3:Training General Slicer3 Training]
 
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;[http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Navigation-with-Aurora Navigation with NDI Aurora]
 
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;[http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Volume-Rendering Volume rendering with Real-time Imaging]
 
  
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==='''Contact Info'''===<br>
 
  
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If you have any comments or requests, please contact Dr. Nobuhiko Hata at: ''hata {at-mark} bwh.harvard.edu''. Dr. Hata leads the development of '''Slicer IGT''' at National Center for Image Guided Therapy.
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='''Contact Information'''=
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If you have any comments or requests, please contact Dr. Nobuhiko Hata (''hata at bwh.harvard.edu'').
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Dr. Hata leads the development of '''Slicer IGT''' at the [http://www.ncigt.org/ National Center for Image Guided Therapy].  See the website of his [http://snr.spl.harvard.edu/ Surgical Navigation and Robotics Laboratory].
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=Sponsors=
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<gallery perrow="4" widths="150px">
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Image:NCIGTlogo.gif|[http://www.ncigt.org National Center for Image Guided therapy]
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Image:Logo_CIMIT.png|[http://www.cimit.org CIMIT]
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Image:NAMIC 380x463.jpg|[http://www.na-mic.org National Alliance for Medical Image Computing]
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Image:Isip.jpg|[http://www.intelli-si.org/index_e.html Intelligent Surgical Instrument Project, Japan]
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</gallery>

Latest revision as of 17:02, 11 April 2023

Home < IGT:ToolKit


The Image Guided Therapy Toolkit is a toolkit being developed at the Brigham and Women's Hospital. The IGT toolkit is a set of open source software tools integrated with supported hardware devices: www.slicer.org 3D Slicer is our main platform for software development and dissemination, and OpenIGTLink is a communication protocol that allows Slicer3 to communicate with imaging devices, trackers and medical robots. We encourage you to download and use the free tools and welcome any comments or feedback.


Tutorials

See the Slicer3 Training page for additional tutorials on Slicer3 capabilities.

Level Tutorial Hardware Requirements Tutorial
1 Basic Navigation Tutorial

Illustrates Slicer3's tracking capabilities using a tracking simulator in place of an actual tracking device

None

Basic Navigation

1 Neurosurgical Planning in Slicer3

Demonstrate's Slicer3's IGT capabilities by using image registration, model making and DTI to create a preoperative plan for neurosurgery

None Neurosurgical Planning Overview
1 Prostate Therapy Planning in Slicer3

Demonstrates Slicer3's IGT capabilities by using deformable registration and model making to create a preoperative plan for prostate therapy

None

Prostate Planning Overview

1 Lego IGT and Medical Robotics Tutorial

Provides an overview of all of the main components of IGT and medical robotics, including imaging, pre-operative planning, targetting by tracking, navigation and registration

Lego Mindstorms NXT robot

Lego Deluxe Brick Box

Lego Tutorial
2 Advanced Navigation Tutorial with a tracking device

Illustrates Slicer3's tracking capabilities using a tracking device, and provides a more advanced overview of the OpenIGTLink protocol

Tracking device e.g. NDI Aurora Advanced Navigation Tutorial



Contact Information

If you have any comments or requests, please contact Dr. Nobuhiko Hata (hata at bwh.harvard.edu).

Dr. Hata leads the development of Slicer IGT at the National Center for Image Guided Therapy. See the website of his Surgical Navigation and Robotics Laboratory.

Sponsors

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