Difference between revisions of "Stanford 2008 Slicer Workshop"

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[[Image:NA-MIC_Workshop_Stanford_09-03-2008.PNG|right|400 px]]
 
==Course Syllabus==
 
==Course Syllabus==
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This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing (NA-MIC) open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software.  
 
This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing (NA-MIC) open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software.  
 
The workshop provides a 1/2 day end-user session geared for all levels, followed by a 1/2 day programming session geared for developers.
 
The workshop provides a 1/2 day end-user session geared for all levels, followed by a 1/2 day programming session geared for developers.
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* '''Morning Session - User and Developer Workshop - 9 am - 12 pm'''  
 
* '''Morning Session - User and Developer Workshop - 9 am - 12 pm'''  
 
** 9:00 am - 9:15 am Preliminary session: Software and data installation trouble shooting
 
** 9:00 am - 9:15 am Preliminary session: Software and data installation trouble shooting
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** 9:15 am - 9:45 am Overview of the open-source NA-MIC toolkit
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** 9:15 am - 9:45 am Overview of NA-MIC (Steve Pieper)
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** 9:45 am - 10:45 am Hands-on Session 1: 3D Data Loading and Visualization
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** 9:45 am - 10:00 am [[media:Slicer3_Introduction_SoniaPujol_Stanford2008.ppt‎ |Slicer3 and the NA-MIC Toolkit]] (Sonia Pujol)
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** 9:45 am - 10:45 am [[media:3DVisualization_SoniaPujol_Stanford2008.ppt‎ |Hands-on Session 1: 3D Data Loading and Visualization ]](Sonia Pujol)
 
** 10:45 am - 11:00 am Coffee-break
 
** 10:45 am - 11:00 am Coffee-break
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** 11:00 am - 11:45 am Hands-on Session 2: Data Saving
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** 11:00 am - 11:45 am [[media:3DVisualization_SoniaPujol_Stanford2008.ppt‎ ‎ |Hands-on Session 2: Data Saving ]](Sonia Pujol)
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** 11:45 am - 12:15 pm Discussion  
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** 11:45 am - 12:15 pm Demos and Discussion (Daniel Rubin)
  
 
*12:15 pm - 2:00 pm Lunch
 
*12:15 pm - 2:00 pm Lunch
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* '''Afternoon Session - Developer Workshop - 2:00 pm - 5:30 pm'''
 
* '''Afternoon Session - Developer Workshop - 2:00 pm - 5:30 pm'''
  
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** 2:00 pm - 2:30 pm: Introduction to the Execution model in Slicer3
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** 2:00 pm - 2:30 pm: [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Introduction to the Execution model in Slicer3 ]] (Sonia Pujol)
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** 2:30 pm - 4:00 pm : Integrating the NA-MIC kit with an external program (Part 1)
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** 2:30 pm - 4:00 pm : [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Integrating the NA-MIC kit with an external program (Part 1)]] (Sonia Pujol)
 
** 4:00 pm - 4:15 pm : Coffee break
 
** 4:00 pm - 4:15 pm : Coffee break
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** 4:15 pm - 5:15 pm : Integrating the NA-MIC kit with an external program (Part 2)
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** 4:15 pm - 5:15 pm : [[media: ProgrammingIntoSlicer3_SoniaPujol_Stanford2008.ppt| Integrating the NA-MIC kit with an external program (Part 2)]] (Sonia Pujol)
 
** 5:15 pm - 5:30 pm : Panel Discussion and Conclusion
 
** 5:15 pm - 5:30 pm : Panel Discussion and Conclusion
  
 
==Course Logistics==
 
==Course Logistics==
 
* Date: Wednesday September 3, 2008
 
* Date: Wednesday September 3, 2008
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* Location: [http://med.stanford.edu/maps/medical_buildings.html Stanford University Medical Center]: Room M112, Alway Building.
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* Location: [http://med.stanford.edu/maps/medical_buildings.html Stanford University Medical Center]: Room M112, Alway Building. [http://med.stanford.edu/maps/to-sumc.html Driving Directions] - [[media:Visitor_Parking_&_Transit_at_Stanford_University.doc‎ |Parking and Transit Options]]
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* '''Registration''': To sign-up for this event, please send an e-mail with the subject line ''Stanford 2008 Workshop'' to Sonia Pujol, Ph.D. (spujol at bwh.harvard.edu) with the following elements  
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* [http://transportation.stanford.edu/parking_info/VisitorParking.shtml Visitor Parking Information at Stanford]
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* '''<span style="background-color: yellow"> Registration </span><br />''' '''To sign-up for this event, please send an e-mail with the subject line ''Stanford 2008 Workshop'' to Sonia Pujol, Ph.D. '''(spujol at bwh.harvard.edu) with the following elements  
 
** contact information: name, title, affiliation and address  
 
** contact information: name, title, affiliation and address  
 
** category: user or developer,
 
** category: user or developer,
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== Pre-Workshop Preparation ==
 
== Pre-Workshop Preparation ==
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<span style="background-color: yellow">Please complete the following items in advance of the workshop. Support will be provided as requested. </span><br />
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<span style="background-color: yellow">Please complete the following items in advance of the workshop. </span><br />
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* If you have registered as a end-user (morning only), please complete the [http://www.na-mic.org/Wiki/index.php/Training:Stanford_User_Workshop_Prerequisite User Prerequisites]
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* If you have registered as a programmer (morning and afternoon), please complete the [http://www.na-mic.org/Wiki/index.php/Training:Stanford_Workshop_Prerequisite Developer Prerequisites]
  
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* If you have registered as a end-user (morning only), please complete the [http://www.na-mic.org/Wiki/index.php/Training:Stanford_User_Workshop_Prerequisite User Prerequisite]
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Please contact the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer Users mailing list] for support and questions related to the software.
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* If you have registered as a programmer (morning and afternoon), please complete the [http://www.na-mic.org/Wiki/index.php/Training:Stanford_Workshop_Prerequisite Developer Prerequisite]
 

Latest revision as of 20:49, 4 September 2008

Home < Stanford 2008 Slicer Workshop
NA-MIC Workshop Stanford 09-03-2008.PNG

Course Syllabus

This workshop is an introduction to the Slicer3 software platform, part of the National Alliance for Medical Imaging Computing (NA-MIC) open-source toolkit. Participants will learn how to use Slicer3 for image analysis and 3D visualization, and how to integrate external programs with the open-source software. The workshop provides a 1/2 day end-user session geared for all levels, followed by a 1/2 day programming session geared for developers.

Course Faculty

  • Sonia Pujol, Ph.D., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School.
  • Steve Pieper, Ph.D., Isomics Inc.
  • Kathryn Hayes, M.S.E., Surgical Planning Laboratory, Brigham and Women's Hospital, Harvard Medical School.

Agenda

  • 12:15 pm - 2:00 pm Lunch
  • Afternoon Session - Developer Workshop - 2:00 pm - 5:30 pm

Course Logistics

Pre-Workshop Preparation

Please complete the following items in advance of the workshop.

Please contact the Slicer Users mailing list for support and questions related to the software.

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