Difference between revisions of "Algorithms:Core1Visit May06"
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* Dates: May 23-24 2006 | * Dates: May 23-24 2006 | ||
− | * Location: UNC Sitterson Hall | + | * Location: UNC Sitterson Hall, 201 South Columbia, Room SN 115 ([http://maps.google.com/maps?f=d&hl=en&saddr=100+Marriott+Way,+Chapel+Hill,+NC+27517&daddr=201+S+Columbia+St,+Chapel+Hill,+NC+27514&ll=35.905876,-79.031696&spn=0.048387,0.06772&om=1 Map from hotel]) |
* Hotel: Courtyard Marriott, 100 Marriott Way, Chapel Hill, NC | * Hotel: Courtyard Marriott, 100 Marriott Way, Chapel Hill, NC | ||
** $119/night discount rate, Discount code: NAMIC meeting | ** $119/night discount rate, Discount code: NAMIC meeting | ||
Line 10: | Line 10: | ||
** Taxi ride 30-35 USD | ** Taxi ride 30-35 USD | ||
* There is very limited parking on campus for visitors (due to construction on the visitor lots), so car rental is not necessarily encouraged. | * There is very limited parking on campus for visitors (due to construction on the visitor lots), so car rental is not necessarily encouraged. | ||
+ | * [http://www.cs.unc.edu/~keyser/restaurants.html Restaurant Guide] to Chapel Hill downtown (status 1999, needs updating, but most of the restaurants are still around) [http://maps.google.com/maps?f=l&hl=en&q=restaurants+&near=201+S+Columbia+St+Chapel+Hill+NC+27514&ll=35.911942,-79.054399&spn=0.006048,0.008465&om=1 A google search template for restaurants.] | ||
+ | |||
+ | === Transportation from Downtown Chapel Hill to Hotel === | ||
+ | |||
+ | * In the evening there is public transportation from downtown Chapel Hill to a bustop close to the Courtyard Marriot. The T/G rout bus drives at 7:19pm, 8:54pm, and 10:29pm from downtown Chapel Hill to NC 54 Parking lot, right next to the Marriot (2 minute walk). [http://townhall.townofchapelhill.org/transit/routes/t_g_evenings.html Bus Details] | ||
+ | * Additionally taxi transportation is affordable and located in downtown Chapel Hill: Tar Heel Taxi Inc (919) 933-1255; Airport Taxi (919) 942-4598; Airport & Intown Taxi(919) 942-4492 | ||
Questions? Please contact Delphine Bull (bull@cs.unc.edu). | Questions? Please contact Delphine Bull (bull@cs.unc.edu). | ||
− | == Agenda | + | == Agenda: Tuesday, May 23 == |
+ | |||
+ | * 8.30 am: Pickup at hotel Marriott and transportation to Sitterson Hall | ||
+ | * 9:00-9:30am Introduction and discussion of agenda (Ross W) | ||
+ | |||
+ | * Segmentation and Shape Analysis - [[Algorithms:Core1Visit_May06:Shape|Notes]] | ||
+ | ** 9:30 am "Enhanced Correspondence and Statistics for Structural Shape Analysis" (Martin S) [[Media:6_05_NAMICShapeUNC.ppt| Slides]] | ||
+ | ** 10:00am "Building Shape Prior Models for Segmentation" (Killian P) [[Media:Pohl-NAMIC-UNC-06-public.pdf| Slides ]] | ||
+ | * 10:30 - 11:00 am Break | ||
+ | |||
+ | * ** 11:00am "A Nonparametric Approach to Shape Correspondence" (Ross W) [[Media:6_05_NAMICShapeUtah.ppt| Slides]] | ||
+ | ** 11:30am Shape Discussion (Martin and Ross) | ||
+ | |||
+ | * 12:00pm Lunch (Lunch Chapel Hill downtown on your own, 10' walk) | ||
+ | |||
+ | * ** 1:30pm Shape Discussion (cont) | ||
+ | |||
+ | * Functional MRI | ||
+ | ** 2:00pm "Some Introductory Remarks on fMRI" [[Media:Core1-fMRI.ppt| Slides]] (Polina G) | ||
+ | ** 2:15pm "Spatial Regularization of fMRI activation" [[Media:Namic_core1_mtg_052306.ppt| Slides]] (Wanmei Ou) | ||
+ | ** 2:45pm "Open problems in fMRI" [[Media:NAMIC_UNC_fMRI_2006_for_upload.ppt| Slides]](Bruce F) | ||
+ | ** Question to be discussed: | ||
+ | *** Can and should Core 1 be more involved in fMRI? | ||
+ | *** How will NAMIC engage fMRI researchers? | ||
+ | |||
+ | * 3:15pm Publishing in NAMIC | ||
+ | ** Questions to be discussed: | ||
+ | *** What is our status? (E.g. generate an ad hoc list of ongoing projects and plans to publish them.) | ||
+ | *** How can we improve Core 1/Core 3 publishing? | ||
+ | |||
+ | (E.g. generate a list of promising Core 3 projects and potential avenues for publication) What will we do with core 3 for its last year of this generation. What will we do with the next generation of core 3 | ||
+ | |||
+ | * 4:00-5:30 Core 2 Interactions [[Algorithms:Core1Visit_May06:Core2|Notes]] | ||
+ | ** "Slicer 3 Update for Core 1" [[Media:Slicer3-Core1-2006-05-23.ppt| Slides]] (Steve P) | ||
+ | |||
+ | * Core 2 Discussion | ||
+ | ** Questions to be discussed: | ||
+ | *** What are the ways to interact with Core 2? | ||
+ | *** How should code get transferred/migrated in ITK? | ||
+ | *** How should applications get built? | ||
+ | *** How can we get applications in the hands of users? | ||
+ | |||
+ | * Open Items | ||
+ | ** Registration (intra, inter-subject, sMRI, DTI, tensors, motion correction etc.) | ||
+ | |||
+ | == Agenda: Wednesday, May 24 == | ||
+ | |||
+ | * 8.30 am: Pickup at hotel Marriott and transportation to Sitterson Hall | ||
+ | * Diffusion Tensor Imaging [[Algorithms:Core1Visit_May24:DTI|Notes]] | ||
+ | ** 9:00am "Correspondence in DTI via unbiased atlas-building" (Casey G) [[Media:Dti-atlas-building.pdf| Slides]] | ||
+ | ** 9:30am "Filtering of DW and DT Images" (Tom F) [[Media:Core1-DTI-filtering.ppt| Slides]] | ||
+ | ** 10:00am "Using MRI to link microstructure and macrostructure" [[Media:NAMIC_UNC_2006_for_upload.pdf| Slides ]](Bruce F) | ||
+ | |||
+ | * 10:30am Break | ||
+ | |||
+ | * Diffusion Tensor Imaging (Cont). | ||
+ | ** 11:00 am "Finsler Geometry and DTI Tractography" [[Media:Namic.core1.meeting.may24.tannenbaum.ppt| Slides]] (Allen T) | ||
+ | ** 11:30 am "White Matter Analysis Through Clustering of DTI data" [[Media:Core1_MIT_DTI.ppt| Slides ]] (Polina G) | ||
+ | |||
+ | * 12:00pm Lunch (Lunch Chapel Hill downtown on your own, 10' walk) | ||
+ | |||
+ | * 1:30pm DTI Discussion (Guido and Allen) | ||
+ | ** Questions to be discussed: | ||
− | * | + | * 2:30pm Evaluating NAMIC Core 1 |
− | * | + | ** Questions to be discussed: |
− | * | + | *** How will we evaluate ourselves (at renewal time)? |
+ | *** How will this standard sit with our evaluators? | ||
+ | *** How will we fare agains this standard? | ||
+ | *** How can we make sure we succeed? | ||
== Background and Preparation == | == Background and Preparation == | ||
− | == | + | == Topics == |
* Software needs of the NAMIC toolkit | * Software needs of the NAMIC toolkit | ||
Line 30: | Line 101: | ||
* Core 1 input into the NAMIC Kit | * Core 1 input into the NAMIC Kit | ||
* Core 1 contributions to training core | * Core 1 contributions to training core | ||
+ | * Planning for Project Week (?) | ||
== Attendees == | == Attendees == | ||
Line 40: | Line 112: | ||
# Casey Goodlett, UNC | # Casey Goodlett, UNC | ||
# Ross Whitaker, Utah | # Ross Whitaker, Utah | ||
− | # John Melonakos, GT | + | # John Melonakos, GT/GE |
# Simon Warfield, HMS | # Simon Warfield, HMS | ||
# Steve Pieper | # Steve Pieper | ||
Line 51: | Line 123: | ||
# Bruce Fischl, MGH | # Bruce Fischl, MGH | ||
# Tom Fletcher, Utah | # Tom Fletcher, Utah | ||
+ | # Jim Miller, GE Research | ||
+ | # Dennis Jen, MGH |
Latest revision as of 13:18, 18 December 2006
Home < Algorithms:Core1Visit May06Contents
Logistics
- Dates: May 23-24 2006
- Location: UNC Sitterson Hall, 201 South Columbia, Room SN 115 (Map from hotel)
- Hotel: Courtyard Marriott, 100 Marriott Way, Chapel Hill, NC
- $119/night discount rate, Discount code: NAMIC meeting
- Rate guaranteed if reservation is made by April 21st, Afterwards they'll try to honor this rate, but it's not guaranteed.
- With a meeting discount, it's best to call for reservations (919) 883-0700 rather than making them online.
- Transportation from Airport:
- Taxi ride 30-35 USD
- There is very limited parking on campus for visitors (due to construction on the visitor lots), so car rental is not necessarily encouraged.
- Restaurant Guide to Chapel Hill downtown (status 1999, needs updating, but most of the restaurants are still around) A google search template for restaurants.
Transportation from Downtown Chapel Hill to Hotel
- In the evening there is public transportation from downtown Chapel Hill to a bustop close to the Courtyard Marriot. The T/G rout bus drives at 7:19pm, 8:54pm, and 10:29pm from downtown Chapel Hill to NC 54 Parking lot, right next to the Marriot (2 minute walk). Bus Details
- Additionally taxi transportation is affordable and located in downtown Chapel Hill: Tar Heel Taxi Inc (919) 933-1255; Airport Taxi (919) 942-4598; Airport & Intown Taxi(919) 942-4492
Questions? Please contact Delphine Bull (bull@cs.unc.edu).
Agenda: Tuesday, May 23
- 8.30 am: Pickup at hotel Marriott and transportation to Sitterson Hall
- 9:00-9:30am Introduction and discussion of agenda (Ross W)
- Segmentation and Shape Analysis - Notes
- 10:30 - 11:00 am Break
- ** 11:00am "A Nonparametric Approach to Shape Correspondence" (Ross W) Slides
- 11:30am Shape Discussion (Martin and Ross)
- 12:00pm Lunch (Lunch Chapel Hill downtown on your own, 10' walk)
- ** 1:30pm Shape Discussion (cont)
- Functional MRI
- 3:15pm Publishing in NAMIC
- Questions to be discussed:
- What is our status? (E.g. generate an ad hoc list of ongoing projects and plans to publish them.)
- How can we improve Core 1/Core 3 publishing?
- Questions to be discussed:
(E.g. generate a list of promising Core 3 projects and potential avenues for publication) What will we do with core 3 for its last year of this generation. What will we do with the next generation of core 3
- Core 2 Discussion
- Questions to be discussed:
- What are the ways to interact with Core 2?
- How should code get transferred/migrated in ITK?
- How should applications get built?
- How can we get applications in the hands of users?
- Questions to be discussed:
- Open Items
- Registration (intra, inter-subject, sMRI, DTI, tensors, motion correction etc.)
Agenda: Wednesday, May 24
- 8.30 am: Pickup at hotel Marriott and transportation to Sitterson Hall
- Diffusion Tensor Imaging Notes
- 10:30am Break
- Diffusion Tensor Imaging (Cont).
- 12:00pm Lunch (Lunch Chapel Hill downtown on your own, 10' walk)
- 1:30pm DTI Discussion (Guido and Allen)
- Questions to be discussed:
- 2:30pm Evaluating NAMIC Core 1
- Questions to be discussed:
- How will we evaluate ourselves (at renewal time)?
- How will this standard sit with our evaluators?
- How will we fare agains this standard?
- How can we make sure we succeed?
- Questions to be discussed:
Background and Preparation
Topics
- Software needs of the NAMIC toolkit
- Algorithmic issue/needs relevant to Core 3
- Special sessions on Shape Analysis, fMRI, DTI
- Update on Slicer 3
- Metrics for success (to be used in renewal considerations)
- Core 1 input into the NAMIC Kit
- Core 1 contributions to training core
- Planning for Project Week (?)
Attendees
If you are interested in attending this week, please note your name here (in general 2-4 people per Core 1 group)
- Guido Gerig, UNC
- Martin Styner, UNC
- Ipek Oguz, UNC
- Casey Goodlett, UNC
- Ross Whitaker, Utah
- John Melonakos, GT/GE
- Simon Warfield, HMS
- Steve Pieper
- Wanmei Ou, MIT
- Polina Golland, MIT
- Allen Tannenbaum, GT
- Bryce Kim, MIT
- Sandy Wells, MIT/BWH
- Kilian Pohl, MIT/BWH
- Bruce Fischl, MGH
- Tom Fletcher, Utah
- Jim Miller, GE Research
- Dennis Jen, MGH