Difference between revisions of "Biositemaps"
(New page: ==Biositemaps== The [[ | NCBC Resourcome Working Group]] of the [http://www.ncbcs.org NIH Roadmap National Centers of Biomedical Computing (NCBC) (www.ncbcs.org)] is prototyping technolog...) |
|||
| (31 intermediate revisions by 3 users not shown) | |||
| Line 1: | Line 1: | ||
| − | + | ''' This is the main page for the NIH Roadmap National Centers for Biomedical Computing (NCBC) Working Group titled: Biositemaps and the Biomedical Resource Ontology (BRO) ''' | |
| − | + | [[SDIWG:Software_and_Data_Integration_Working_Group|Top page of NCBC Working Groups web site]] | |
| + | |||
| + | Contacts for this Working Group are [http://www.loni.ucla.edu/~dinov/Dinov_Email.gif Ivo Dinov], [mailto:whetzel@stanford.edu Trish Whetzel], and [mailto:lysterp@mail.nih.gov Peter Lyster] | ||
| + | |||
| + | For more information about the NCBCs visit the [http://www.ncbcs.org/ Top page of ncbcs.org web site which is maintained by the NCBCs themselves] | ||
| + | |||
| + | Legacy [[SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies]] Page | ||
| + | |||
| + | ---- | ||
| + | |||
| + | '''Biositemaps Project''' | ||
| + | |||
| + | The Biositemaps Working Group of the [http://www.ncbcs.org/ NIH Roadmap National Centers of Biomedical Computing (NCBC) (www.ncbcs.org)] has developed a standard for communicating information on the Internet about biomedical resources (tools, data, software, material, and services). <b>The official public site of the Biositemaps Project is http://www.biositemaps.org/</b> In addition, the working group is using the biositemaps standard to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources on the Internet. Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘'biositemap.rdf' which conforms to a defined Information Model and uses concepts from the Biomedical Resource Ontology (BRO) describe the resources. Each biositemap.rdf file is simply a list of controlled metadata about resources that your organization uses or believes are important to biomedical research. | ||
| − | |||
| − | |||
* The key enabling technologies are the [http://www.ncbcs.org/biositemaps/formatDescription.html Information Model (IM)] which is the list of metadata fields about each resource (Resource_name, description, contact_person, resource_type,...) and | * The key enabling technologies are the [http://www.ncbcs.org/biositemaps/formatDescription.html Information Model (IM)] which is the list of metadata fields about each resource (Resource_name, description, contact_person, resource_type,...) and | ||
| − | * The [http://bioportal.bioontology.org/ | + | * The [http://bioportal.bioontology.org/visualize/39977 Biomedical Resource Ontology (BRO) v2.7] which is a controlled terminology for the 'resource_type', 'area_of_research', and 'biomedical_activity' and which is used to improve the sensitivity and specificity of web searches. This is under development by a number of NIH-funded researchers who have a combined interest in classification of biomedical resources. The publication site for BRO is the BioPortal. |
| + | |||
| + | ---- | ||
| + | |||
| + | '''CIRWP Project''' | ||
| + | |||
| + | * CIRWP GForge project page: https://bmir-gforge.stanford.edu/gf/project/cirwp_project/ | ||
| + | * CIRWP Confluence page (password-protected): https://www.umms.med.umich.edu/confluence/display/CIRWPQT/Home | ||
| + | |||
| + | |||
| + | ---- | ||
| + | |||
| + | '''Current List of Biositemaps [[Feature_Requests | Feature Requests]]''' | ||
| + | |||
| + | '''Current List of [[Search_Engines | Biositemaps Search Engines]]''' | ||
| + | |||
| + | '''Current List of [[FAQs | Biositemaps FAQs]]''' | ||
| + | |||
| + | '''Current List of [[URLs | URLS that are used by Biositemaps Developers]]''' | ||
| + | |||
| + | '''Current List of [[Developers_Meetings_and_Minutes | Developers Meetings and Minutes]] | ||
| + | |||
| + | ---- | ||
| + | |||
| + | '''[http://www.na-mic.org/Wiki/index.php/SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies Archive Biositemaps/Resourceome/Yellow Pages Development Pages]''' | ||
| + | * [http://itools.ccb.ucla.edu/ iTools] (biositemaps producer and consumer) | ||
| − | + | Site last updated: 20090607 | |
| − | |||
Latest revision as of 18:37, 19 February 2010
Home < BiositemapsThis is the main page for the NIH Roadmap National Centers for Biomedical Computing (NCBC) Working Group titled: Biositemaps and the Biomedical Resource Ontology (BRO)
Top page of NCBC Working Groups web site
Contacts for this Working Group are Ivo Dinov, Trish Whetzel, and Peter Lyster
For more information about the NCBCs visit the Top page of ncbcs.org web site which is maintained by the NCBCs themselves
Legacy SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies Page
Biositemaps Project
The Biositemaps Working Group of the NIH Roadmap National Centers of Biomedical Computing (NCBC) (www.ncbcs.org) has developed a standard for communicating information on the Internet about biomedical resources (tools, data, software, material, and services). The official public site of the Biositemaps Project is http://www.biositemaps.org/ In addition, the working group is using the biositemaps standard to address (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources on the Internet. Each site which intends to contribute to the inventory instantiates a file on its Internet site ‘'biositemap.rdf' which conforms to a defined Information Model and uses concepts from the Biomedical Resource Ontology (BRO) describe the resources. Each biositemap.rdf file is simply a list of controlled metadata about resources that your organization uses or believes are important to biomedical research.
- The key enabling technologies are the Information Model (IM) which is the list of metadata fields about each resource (Resource_name, description, contact_person, resource_type,...) and
- The Biomedical Resource Ontology (BRO) v2.7 which is a controlled terminology for the 'resource_type', 'area_of_research', and 'biomedical_activity' and which is used to improve the sensitivity and specificity of web searches. This is under development by a number of NIH-funded researchers who have a combined interest in classification of biomedical resources. The publication site for BRO is the BioPortal.
CIRWP Project
- CIRWP GForge project page: https://bmir-gforge.stanford.edu/gf/project/cirwp_project/
- CIRWP Confluence page (password-protected): https://www.umms.med.umich.edu/confluence/display/CIRWPQT/Home
Current List of Biositemaps Feature Requests
Current List of Biositemaps Search Engines
Current List of Biositemaps FAQs
Current List of URLS that are used by Biositemaps Developers
Current List of Developers Meetings and Minutes
Archive Biositemaps/Resourceome/Yellow Pages Development Pages
- iTools (biositemaps producer and consumer)
Site last updated: 20090607
