Difference between revisions of "UNC ARCTIC Tutorial"

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[[Image:Arctic_Logo.png  |300px|thumb|right]]
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=ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial=
 
=ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial=
  
 
==Overview==
 
==Overview==
  
Following thoss tutorials, you will be able to perform an individual analysis of regional cortical thickness.
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The two following tutorials will allow you to perform an individual analysis of regional cortical thickness:
In the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes.  
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* '''Automatic analysis''': in the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes.
And in the UNC external modules, you will be able to run the UNC external modules within Slicer3 or using the command line.
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* '''Step by step analysis''': in the UNC external modules tutorial, you will be able to run individually the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis.
  
  
 
Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline
 
Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline
  
==Tutorial==
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==Tutorials==
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• '''ARCTIC tutorial''' : end-to-end Slicer3 module to perform automatic regional cortical thickness analysis[[Media:ARCTIC-Slicer3-Tutorial.ppt|‏ [ppt]]][[Media:ARCTIC-Slicer3-Tutorial.pdf|‏ [pdf]]]
  
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• '''UNC Modules tutorial''' : UNC Slicer3 modules to perform regional cortical thickness analysis step by step[[Media:UNC_Modules-Slicer3-Tutorial.ppt| [ppt]‏]][[Media:UNC_Modules-Slicer3-Tutorial.pdf| [pdf]‏]]
  
 
==Software==
 
==Software==
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• [http://www.nitrc.org/projects/arctic/ External modules (ARCTIC_Executables_1.0)]
 
• [http://www.nitrc.org/projects/arctic/ External modules (ARCTIC_Executables_1.0)]
  
• [http://www.insight-journal.org/midas/item/view/2277 ‏Pediatic atlas (UNC_Pediatric_Brain_Atlas)]‏
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• [http://www.insight-journal.org/midas/item/view/2277 ‏Pediatric atlas (UNC_Pediatric_Brain_Atlas)]‏
 
  
 
==People==
 
==People==

Latest revision as of 01:22, 7 January 2009

Home < UNC ARCTIC Tutorial
Arctic Logo.png

ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial

Overview

The two following tutorials will allow you to perform an individual analysis of regional cortical thickness:

  • Automatic analysis: in the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes.
  • Step by step analysis: in the UNC external modules tutorial, you will be able to run individually the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis.


Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline

Tutorials

ARCTIC tutorial : end-to-end Slicer3 module to perform automatic regional cortical thickness analysis‏ [ppt]‏ [pdf]

UNC Modules tutorial : UNC Slicer3 modules to perform regional cortical thickness analysis step by step [ppt]‏ [pdf]‏

Software

• Slicer3 http://www.slicer.org/pages/Downloads

• BatchMake‏ http://www.batchmake.org/batchmake/resources/software.html

Tutorial materials

BatchMake wrapper (ARCTIC_BatchMake_Wrapper_1.0)‏

Tutorial dataset(ARCTIC_Tutorial_example_1.0)

External modules (ARCTIC_Executables_1.0)

‏Pediatric atlas (UNC_Pediatric_Brain_Atlas)

People

Cedric Mathieu

Clement Vachet

Martin Styner

Heather Cody Hazlett