Difference between revisions of "UNC ARCTIC Tutorial"
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=ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial= | =ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial= | ||
==Overview== | ==Overview== | ||
| − | + | The two following tutorials will allow you to perform an individual analysis of regional cortical thickness: | |
| − | + | * '''Automatic analysis''': in the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes. | |
| − | + | * '''Step by step analysis''': in the UNC external modules tutorial, you will be able to run individually the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis. | |
Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline | Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline | ||
| − | == | + | ==Tutorials== |
| + | |||
| + | • '''ARCTIC tutorial''' : end-to-end Slicer3 module to perform automatic regional cortical thickness analysis[[Media:ARCTIC-Slicer3-Tutorial.ppt| [ppt]]][[Media:ARCTIC-Slicer3-Tutorial.pdf| [pdf]]] | ||
| − | • [ | + | • '''UNC Modules tutorial''' : UNC Slicer3 modules to perform regional cortical thickness analysis step by step[[Media:UNC_Modules-Slicer3-Tutorial.ppt| [ppt]]][[Media:UNC_Modules-Slicer3-Tutorial.pdf| [pdf]]] |
==Software== | ==Software== | ||
Latest revision as of 01:22, 7 January 2009
Home < UNC ARCTIC Tutorial
Contents
ARCTIC (Automatic Regional Cortical ThICkness) Slicer3 Tutorial
Overview
The two following tutorials will allow you to perform an individual analysis of regional cortical thickness:
- Automatic analysis: in the ARCTIC tutorial, you will learn how to load input volumes, run the end-to-end module ARCTIC to generate cortical thickness information and display output volumes.
- Step by step analysis: in the UNC external modules tutorial, you will be able to run individually the UNC external modules within Slicer3 in order to perform a regional cortical thickness analysis.
Roadmap project : http://www.na-mic.org/Wiki/index.php/DBP2:UNC:Regional_Cortical_Thickness_Pipeline
Tutorials
• ARCTIC tutorial : end-to-end Slicer3 module to perform automatic regional cortical thickness analysis [ppt] [pdf]
• UNC Modules tutorial : UNC Slicer3 modules to perform regional cortical thickness analysis step by step [ppt] [pdf]
Software
• Slicer3 http://www.slicer.org/pages/Downloads
• BatchMake http://www.batchmake.org/batchmake/resources/software.html
Tutorial materials
• BatchMake wrapper (ARCTIC_BatchMake_Wrapper_1.0)
• Tutorial dataset(ARCTIC_Tutorial_example_1.0)
• External modules (ARCTIC_Executables_1.0)
• Pediatric atlas (UNC_Pediatric_Brain_Atlas)
People
Cedric Mathieu
Clement Vachet
Martin Styner
Heather Cody Hazlett
