Difference between revisions of "2009 Summer Project Week Slicer3 Adaptive Radiotherapy"

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(Created page with '__NOTOC__ <gallery> Image:PW2009-v3.png|Project Week Main Page Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus ...')
 
 
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__NOTOC__
 
__NOTOC__
 
<gallery>
 
<gallery>
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Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
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Image:PW2009-v3.png|[[2009_Summer_Project_Week#Projects|Project Week Main Page]]
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Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
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Image:PW2009-ART-rigid.jpg|Rigid registration of pre-treatment and mid-treatment scan.
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Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
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Image:PW2009-ART-warped.jpg|Deformable registration of pre-treatment and mid-treatment scan.
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Image:PW2009-ART-ss.jpg|Radiotherapy structures warped from pre-treatment to mid-treatment scan.
 
</gallery>
 
</gallery>
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==Instructions for Use of this Template==
 
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#Please create a new wiki page with an appropriate title for your project using the convention Project/<Project Name>
 
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#Copy the entire text of this page into the page created above
 
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#Link the created page into the list of projects for the project event
 
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#Delete this section from the created page
 
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#Send an email to tkapur at bwh.harvard.edu if you are stuck
 
  
 
==Key Investigators==
 
==Key Investigators==
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* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
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* MGH: Greg Sharp, Rui Li, Annie Chan
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* Utah: Tom Fletcher, Ross Whitaker
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* NA-MIC: Steve Pieper, Wendy Plesniak
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* Magna Graecia University: Maria Francesca Spadea
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* Politecnico di Milano: Marta Peroni
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* MIT: Polina Golland
  
 
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<h3>Objective</h3>
 
<h3>Objective</h3>
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We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
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<ul>
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<li>Add DicomRT Structure Set import to labelmap</li>
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<li>Investigate DicomRT RTDOSE import</li>
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<li>Check RTSS and RTDOSE storage in XNAT (Dan Marcus)</li>
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<li>Discuss long-term solution for DicomRT sturctures (labelmaps are not suitable for overlapping structures)</li>
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<li>Discuss Dicom RTDOSE import and display</li>
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<li>Discuss source code sharing strategy</li>
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</ul>
  
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
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<ul>
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Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below. The main challenge to this approach is <foo>.
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<li>Discuss strategy.</li>
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</ul>
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Our plan for the project week is to first try out <bar>,...
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
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Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.
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<ul>
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<li>Discuss and review: mesh representation using VTK File I/O.</li>
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<li>
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Upload DicomRT sample to wiki: [[media:Xio-4.33-chest_phantom_dicomrt.tar.gz]]
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</li>
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</ul>
 
</div>
 
</div>
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</div>
 
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<div style="width: 970%; float: left;">
 
  
 
==References==
 
==References==
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*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
 
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* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
 
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* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
 
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* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .
 
  
 
</div>
 
</div>

Latest revision as of 15:31, 26 June 2009

Home < 2009 Summer Project Week Slicer3 Adaptive Radiotherapy

  • Rigid registration of pre-treatment and mid-treatment scan.

  • Deformable registration of pre-treatment and mid-treatment scan.

  • Radiotherapy structures warped from pre-treatment to mid-treatment scan.

Key Investigators

  • MGH: Greg Sharp, Rui Li, Annie Chan
  • NA-MIC: Steve Pieper, Wendy Plesniak
  • Magna Graecia University: Maria Francesca Spadea
  • Politecnico di Milano: Marta Peroni
  • MIT: Polina Golland

Objective

  • Add DicomRT Structure Set import to labelmap
  • Investigate DicomRT RTDOSE import
  • Check RTSS and RTDOSE storage in XNAT (Dan Marcus)
  • Discuss long-term solution for DicomRT sturctures (labelmaps are not suitable for overlapping structures)
  • Discuss Dicom RTDOSE import and display
  • Discuss source code sharing strategy

Approach, Plan

  • Discuss strategy.

Progress

References

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