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** 11:30 PM - 12:00 PM Introduction to Slicer in IGT (slide).
 
** 11:30 PM - 12:00 PM Introduction to Slicer in IGT (slide).
 
** 12:00 PM - 1:00 PM Lunch on your own. Confirming compilation, SVN co/ci.  
 
** 12:00 PM - 1:00 PM Lunch on your own. Confirming compilation, SVN co/ci.  
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** 1:00 PM - 2:30 PM Surgical Planning (segmentation, model generation, dti, registration)
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** 1:00 PM - 2:30 PM OpenIGTLink I/F converting STL model,joint, vtkModel (understanding MRML)
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** 3:00 PM - 4:30 PM Open IGT Link, STL model, joint, vtkModel (understanding MRML)
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** 3:00 PM - 4:30 PM OpenIGTLink custom software, changing MRML and model property based on OpenIGTLink input (sphere changing color)
 
** 4:30 PM - 6:00 PM Customized GUI, skeleton generator, loadable module
 
** 4:30 PM - 6:00 PM Customized GUI, skeleton generator, loadable module
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** 6:00 PM - 6:30 PM Wrap-up
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** 6:00 PM - 7:00 PM Hata-Mori-Hayashi meeting on BrainLab-Slicer integration
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** 7:00 PM  PM Noby Hata leaves to Nagoya Airport
  
 
= '''Pre-Workshop Preparation''' =
 
= '''Pre-Workshop Preparation''' =
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The workshop is a series of hands-on sessions. <span style="background-color: yellow">Please complete the following tasks
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*The workshop is a series of hands-on sessions. <span style="background-color: yellow">Please complete the following tasks in advance of the workshop.</span>
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in advance of the workshop.</span>
 
  
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Please allow yourself ample preparation time.  Depending on network connection and configuration of your laptop it may take anywhere from 10 to 60 minutes to complete these download and installation tasks.   
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*Please allow yourself ample preparation time.  Depending on network connection and configuration of your laptop it may take anywhere from 10 to 60 minutes to complete these download and installation tasks.   
  
−
The following components of the NA-MIC kit will be used during the workshop.  
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*The following components of the NA-MIC kit will be used during the workshop.  
  
 
* 1. '''Slicer3''': software application  
 
* 1. '''Slicer3''': software application  
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='''Slicer3 Software''' =
 
='''Slicer3 Software''' =
  
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Please install the version of Slicer3 appropriate to the platform you'll be working on during the workshop
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*Please follow the instruction at https://www.slicer.org/wiki/Slicer3:Build_Instructions#Building_the_3.4_release, check out the latest slicer from the SVN repository, and compile 3D Slicer.
  
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* Windows XP: [http://www.na-mic.org/Slicer/Download/Snapshots/win32/Slicer3-3.2.2008-08-20-win32.exe Slicer3-3.2.2008-08-20-win32.exe]
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*Go to Slicer Training page http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training and finish the following tutorials.
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* Mac OSX Darwin PPC: [http://www.na-mic.org/Slicer/Download/Snapshots/darwin-ppc/Slicer3-3.2.2008-08-20-darwin-ppc.tar.gz Slicer3-3.2.2008-08-20-darwin-ppc.tar.gz]
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**1.1   Data Loading and 3D Visualization in Slicer3  
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* Mac OSX Darwin Intel: [http://www.na-mic.org/Slicer/Download/Snapshots/darwin-x86/Slicer3-3.2.2008-08-20-darwin-x86.tar.gz Slicer3-3.2.2008-08-20-darwin-x86.tar.gz]
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**1.3    Manual segmentation with 3D Slicer
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* Linux x86: [http://www.na-mic.org/Slicer/Download/Snapshots/linux-x86/Slicer3-3.2.2008-08-20-linux-x86.tar.gz Slicer3-3.2.2008-08-20-linux-x86.tar.gz]
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**1.4    Affine and Deformable Registration in Slicer 3
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* Linux x86-64: [http://www.na-mic.org/Slicer/Download/Snapshots/linux-x86_64/Slicer3-3.2.2008-08-20-linux-x86_64.tar.gz Slicer3-3.2.2008-08-20-linux-x86_64.tar.gz]
 
−
 
 
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Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.
 
  
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Note: Apple Mac OS X
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=Course Material=
 +
*Open IGT Link [http://www.na-mic.org/Wiki/index.php/OpenIGTLink]
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*Downloading models and images [http://www.na-mic.org/Wiki/index.php/Slicer3.2:Training]
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**"Data Loading and 3D Visualization in Slicer3 "
  
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For Mac OS 10.4.10 (Tiger) install X11 from the OS disk 1 (not installed by default on new machines).  
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*"svn co https://www.nitrc.org/svn/slicer3examples/trunk/Slicer3ExampleModules Slicer3ExampleModules"
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* https://www.slicer.org/wiki/Slicer3:Loadable_Modules:HOWTO
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* http://www.na-mic.org/Wiki/index.php/Slicer3:SkeletonGenerator
  
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For Mac OS 10.5 (Leopard) visit the [http://xquartz.macosforge.org/trac/wiki xquartz website] and install xquartz.
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=Contact=
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='''Datasets'''=
 
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Please download the following datasets for the hands-on sessions:
 
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*Linux/Mac/Windows:
 
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** The [[media:SlicerSampleVisualization-2009-02-24.zip | SlicerSampleVisualization]] will be used for the hands-on sessions.
 
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** The [[media:Patient1.zip | RSNA dataset ]] contains examples of 3D reconstructions of anatomical structures of the abdomen.
 
  
 
Please contact the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer Users mailing list] for support and questions related to the software.
 
Please contact the [http://massmail.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer Users mailing list] for support and questions related to the software.
  
 
Back to [[Events|Events]]
 
Back to [[Events|Events]]

Latest revision as of 18:07, 10 July 2017

Home < SlicerNagoyaJune2009Workshop

3D Visualization Workshop

Sponsors


Learning Objectives

The learning objectives of the workshop are to understand the basic functions of slicer in the context of image guided therapy, open igt link, programming methods to develop customized interface panel in Slicer.

Pre-requisit

The participants are expected to have account in SVN account for Intelligent-SI project. Programming environment - Compilation environment for Slicer including appropriate compiler and SVN client.

Course Faculty

  • Nobuhiko Hata, Ph,D, Associate Professor of Radiology, Brigham and Women's Hospital


Logistics and Registration

  • Date: Tuesday June 16, 2009
  • Time: 10AM - 5:30 PM
  • Location: Nagoya Institute of Technology
  • Participants are required to come with their own computer (PC, Linux or MacOS) with a 3D Slicer compiled (see below for instruction).
  • Bring your own lunch and snacks.

Agenda

    • 11:00 AM - 11:30 AM Noby Hata arrives.
    • 11:30 PM - 12:00 PM Introduction to Slicer in IGT (slide).
    • 12:00 PM - 1:00 PM Lunch on your own. Confirming compilation, SVN co/ci.
    • 1:00 PM - 2:30 PM OpenIGTLink I/F converting STL model,joint, vtkModel (understanding MRML)
    • 3:00 PM - 4:30 PM OpenIGTLink custom software, changing MRML and model property based on OpenIGTLink input (sphere changing color)
    • 4:30 PM - 6:00 PM Customized GUI, skeleton generator, loadable module
    • 6:00 PM - 7:00 PM Hata-Mori-Hayashi meeting on BrainLab-Slicer integration
    • 7:00 PM PM Noby Hata leaves to Nagoya Airport

Pre-Workshop Preparation

  • The workshop is a series of hands-on sessions. Please complete the following tasks in advance of the workshop.
  • Please allow yourself ample preparation time. Depending on network connection and configuration of your laptop it may take anywhere from 10 to 60 minutes to complete these download and installation tasks.
  • The following components of the NA-MIC kit will be used during the workshop.
  • 1. Slicer3: software application
  • 2. Datasets: pre-computed MR datasets

Slicer3 Software

Course Material

  • Open IGT Link [1]
  • Downloading models and images [2]
    • "Data Loading and 3D Visualization in Slicer3 "

Contact

Please contact the Slicer Users mailing list for support and questions related to the software.

Back to Events

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