Difference between revisions of "4DUSandEndoscope"
From NAMIC Wiki
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== Collaborators == | == Collaborators == | ||
− | Jan Gumprecht | + | Jan Gumprecht |
+ | * E-Mail: jgumprec(at)bwh.harvard.edu | ||
+ | * Location: Kyushu, Japan | ||
+ | * Timezone: GMT + 9 | ||
− | Jae-Sung Hung, PhD | + | Jae-Sung Hung, PhD |
+ | * E-Mail: hong(at)dem.med.kyushu-u.ac.jp | ||
+ | * Location: Kyushu, Japan | ||
+ | * Timezone: GMT + 9 | ||
− | Nobuhiko Hata, PhD | + | Nobuhiko Hata, PhD |
− | + | * E-Mail: hata(at)bwh.harvard.edu | |
+ | * Location: Boston, USA | ||
+ | * Timezone: GMT - 5 | ||
− | Haiying Liu | + | Haiying Liu |
+ | * E-Mail: hliu(at)bwh.harvard.edu | ||
+ | * Location: Boston, USA | ||
+ | * Timezone: GMT - 5 | ||
− | Yamada Atsushi, PhD | + | Yamada Atsushi, PhD |
+ | * E-Mail: yamada.atsushi(at)nitech.ac.jp | ||
+ | * Location: Nagoya, Japan | ||
+ | * Timezone: GMT + 9 | ||
+ | |||
+ | == Project Description == | ||
+ | |||
+ | The goal of this project is to create a new 3D Slicer Module that can overlay patient registered 4D US volumes with endoscopic images. | ||
+ | |||
+ | The Project is divided into four part: 4D Ultrasound Volume Reconstruction, Patient-Image Registration, Endoscope Overlay, and Endoscope Calibration. All four parts will be accessable through a single 3D Slicer Module. | ||
+ | |||
+ | [[Image:ModuleWorkflow.png | 600px ]] | ||
+ | |||
+ | === Overall Progress === | ||
+ | |||
+ | {| border="0" cellpadding="3" cellspacing=0 | ||
+ | |||
+ | |- bgcolor="#abcdef" | ||
+ | |||
+ | ! Month !! Week # !! Start Date - End Date !! Done !! Date Done | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height=5| | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 34 !! 17.08 - 23.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 33 !! 10.08 - 16.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | || colspan="2" | Endoscopic Overlay and Endoscopic Calibration shall be finished ||align="center" | || | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | !| August !! Week 32 !! 03.08.09 - 09.08.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |- | ||
+ | |||
+ | | || colspan="2" | New PC set up ||align="center" | x || Thu Jul, 30th | ||
+ | |||
+ | |- | ||
+ | |||
+ | | || colspan="2" | New PC arrived ||align="center" | x || Tue Jul, 28th | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 31 !! 27.07 - 02.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80" | || colspan="2" width="550" | Project Page created ||align="center" width="50" | x || width="120" | Fri Jul, 24th | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | ! July !! Week 30 || 20.07.09 - 26.07.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | === General To Do === | ||
+ | |||
+ | {|border="0" cellpadding="5" | ||
+ | |||
+ | |- bgcolor="silver" | ||
+ | |||
+ | ! colspan="2" | Tasks | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" width="730px"|Fill Project Page with Information | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" width="730px"|Order new Frame Grabber Card | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left" width="730px"|Set Up New Computer | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left" width="730px"|Order new PC | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" bgcolor="#009900" | DONE || align="left" | Create Project Page | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | === Details === | ||
+ | |||
+ | * The following frame grabber card only provides grayscale images: I-O DATA GV-VCP3R/PCI (video decoder chip CX2388x) [http://www.iodata.jp/product/tv/capture/gv-vcp3pci/index.htm] | ||
+ | |||
+ | |||
+ | ---- | ||
+ | ---- | ||
+ | |||
+ | == 3D Slicer Module == | ||
+ | |||
+ | |||
+ | |||
+ | * Responsible: Jan Gumprecht | ||
+ | === Details === | ||
+ | * The module is available through svn: http://svn.na-mic.org/NAMICSandBox/trunk/IGTLoadableModules/4DUsEndoNav/ | ||
+ | |||
+ | === Progress === | ||
+ | |||
+ | {| border="0" cellpadding="3" cellspacing=0 | ||
+ | |||
+ | |- bgcolor="#abcdef" | ||
+ | |||
+ | ! Month !! Week # !! Start Date - End Date !! Done !! Date Done | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height=5| | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 34 !! 17.08 - 23.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 33 !! 10.08 - 16.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80px"| || colspan="2" width="550px"| Source Code checked in to svn ||align="center" width="50px" | x || width="120px" | Thu, Aug 6th | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80px"| || colspan="2" width="550px"| Second Window works ||align="center" width="50px" | x || width="120px" | Thu, Aug 6th | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | !| August !! Week 32 !! 03.08.09 - 09.08.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80px"| || colspan="2" width="550px"| Created First prototype of module ||align="center" width="50px" | x || width="120px" | Fri, Jul 31st | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 31 !! 27.07 - 02.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | ! July !! Week 30 || 20.07.09 - 26.07.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | === To Do === | ||
+ | |||
+ | {|border="0" cellpadding="5" | ||
+ | |||
+ | |- bgcolor="silver" | ||
+ | |||
+ | ! colspan="2" | Tasks | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" | Close Second window with OS native commands, i.e. click the "X" in the right upper corner | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" | Comprehend Prostate nav module's source code | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left" | Check in source to svn | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left" | Include Second Window source code | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left"| Create first prototyp of module, i.e. adapt IGTWizard Module | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | |||
+ | ---- | ||
+ | |||
+ | ---- | ||
+ | |||
+ | == 4D Ultrasound Volume Reconstruction== | ||
+ | * Responsible: Jan Gumprecht | ||
+ | === Details === | ||
+ | |||
+ | The project is described here: [[http://wiki.na-mic.org/Wiki/index.php/User:Gumprecht]] | ||
+ | |||
+ | === Progress === | ||
+ | |||
+ | {| border="0" cellpadding="3" cellspacing=0 | ||
+ | |||
+ | |- bgcolor="#abcdef" | ||
+ | |||
+ | ! Month !! Week # !! Start Date - End Date !! Done !! Date Done | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height=5| | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 34 !! 17.08 - 23.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 33 !! 10.08 - 16.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | !| August !! Week 32 !! 03.08.09 - 09.08.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80" | || width="550" colspan="2" | Update Calibration and Spacing Handeling || width="50" align="center" | || width="120" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80" | || width="550" colspan="2" | New Commandline parameter added to grab a test image || width="50" align="center" | x || width="120" | Tue, Jul 30th | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80" | || width="550" colspan="2" | All parameters of the calibration file are now used || width="50" align="center" | x || width="120" | Tue, Jul 28th | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80" | || width="550" colspan="2" | OpenIGTLink is now externally, no local copy within the source code is used anymore || width="50" align="center" | x || width="120" | Mon, Jul 27th | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 31 !! 27.07 - 02.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |- | ||
+ | |||
+ | | width="80" | || width="550" colspan="2" | Show demo of the system || width="50" align="center" | || width="120" | | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | ! July !! Week 30 || 20.07.09 - 26.07.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | === To Do === | ||
+ | |||
+ | {|border="0" cellpadding="5" | ||
+ | |||
+ | |- bgcolor="silver" | ||
+ | |||
+ | ! colspan="2" | Tasks | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" s| O || align="left" width="730"| Find Segmentation Fault | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" width="730"| Update Handling of Spacing | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" width="730"| Update Calibration Part | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left" width="730"| Set up existing Hardware for first demo | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left" width="730"| Update CalibrationFileReader | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | |||
+ | |||
+ | ---- | ||
+ | |||
+ | ---- | ||
+ | |||
+ | == Patient-Image Registration == | ||
+ | * Responsible: Jae-Sung Hong | ||
+ | |||
+ | === Details === | ||
+ | |||
+ | === Progress === | ||
+ | |||
+ | {| border="0" cellpadding="3" cellspacing=0 | ||
+ | |||
+ | |- bgcolor="#abcdef" | ||
+ | |||
+ | ! Month !! Week # !! Start Date - End Date !! Done !! Date Done | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height=5| | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 34 !! 17.08 - 23.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 33 !! 10.08 - 16.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | !| August !! Week 32 !! 03.08.09 - 09.08.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80"| || colspan="2" width="550"| Start integration with 4D Ultrasound ||align="center" width="50" | || width="120" | | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 31 !! 27.07 - 02.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | ! July !! Week 30 || 20.07.09 - 26.07.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | === To Do === | ||
+ | |||
+ | {|border="0" cellpadding="5" | ||
+ | |||
+ | |- bgcolor="silver" | ||
+ | |||
+ | ! colspan="2" | Tasks | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" width="730"|Dummy Task | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | |||
+ | |||
+ | ---- | ||
+ | |||
+ | ---- | ||
+ | |||
+ | == Endoscope Overlay == | ||
+ | * Responsible: Yamada Atsushi, Haiying Liu | ||
+ | === Details === | ||
+ | * [http://www.na-mic.org/Wiki/index.php/OpenCV_Module_in_Slicer3 OpenCV Module in Slicer3] | ||
+ | * [http://www.na-mic.org/Wiki/index.php/Slicer3_FlexibleLayouts Multiple Camera Support in Slicer3] | ||
+ | * [http://wiki.ncigt.org/index.php/U41:Prostate:BRP:Common_Module_For_Multiple_Robots Transrectal/Transperineal biopsy robot module merge] | ||
+ | * [http://opencv.willowgarage.com/wiki/ Open CV Wiki] | ||
+ | * [http://wiki.intelli-si.org/index.php?title=2009SummerSecondDisplayProject Summer Second Display Project] (Japanese) | ||
+ | |||
+ | === Bug Fixes for the 3D Slicer Module === | ||
+ | |||
+ | * There is a bug in OpenCV related to V4L2 devices: | ||
+ | ** Here is the bugtrac with information: [[https://bugs.launchpad.net/ubuntu/+source/linux/+bug/260251]] | ||
+ | *** Somehow this is related to bttv 878 cards. OpenCV seem not to be able to handle all output of the card correctly | ||
+ | ** Here is the fix [[http://opencvlibrary.svn.sourceforge.net/viewvc/opencvlibrary/trunk/opencv/src/highgui/cvcap_v4l.cpp?r1=1604&r2=1609]] | ||
+ | *** Apply the changes of revision 1609 to the file # opencv/src/highgui/cvcap_v4l.cpp | ||
+ | |||
+ | === Progress === | ||
+ | |||
+ | {| border="0" cellpadding="3" cellspacing=0 | ||
+ | |||
+ | |- bgcolor="#abcdef" | ||
+ | |||
+ | ! Month !! Week # !! Start Date - End Date !! Done !! Date Done | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height=5| | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 34 !! 17.08 - 23.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 33 !! 10.08 - 16.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80" | || width="550" colspan="2" | Endoscopic Overlay shall be finished ||align="center" width="50" | || width="120" | | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | !| August !! Week 32 !! 03.08.09 - 09.08.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | || colspan="2" | ||align="center" | || | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 31 !! 27.07 - 02.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | ! July !! Week 30 || 20.07.09 - 26.07.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | === To Do === | ||
+ | |||
+ | {|border="0" cellpadding="5" | ||
+ | |||
+ | |- bgcolor="silver" | ||
+ | |||
+ | ! colspan="2" | Tasks | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" width="730"|Dummy Task | ||
+ | |||
+ | |- bgcolor="silver" | ||
+ | |||
+ | ! colspan="2" | Endoscope overlay | ||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | |||
+ | |||
+ | ---- | ||
+ | |||
+ | ---- | ||
+ | |||
+ | == Endoscope Calibration == | ||
+ | * Responsible: Dr. Yang | ||
+ | === Details === | ||
+ | |||
+ | === Progress === | ||
+ | |||
+ | {| border="0" cellpadding="3" cellspacing=0 | ||
+ | |||
+ | |- bgcolor="#abcdef" | ||
+ | |||
+ | ! Month !! Week # !! Start Date - End Date !! Done !! Date Done | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height=5| | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 34 !! 17.08 - 23.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 33 !! 10.08 - 16.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | width="80" | || width="550" colspan="2" | Endoscopic Calibration shall be finished ||align="center" width="50"| || width="120" | | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | !| August !! Week 32 !! 03.08.09 - 09.08.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- | ||
+ | |||
+ | | || colspan="2" | ||align="center" | || | ||
+ | |||
+ | |- bgcolor="#E8E8E8" | ||
+ | |||
+ | !bgcolor="#FFFFFF"| !! Week 31 !! 27.07 - 02.08 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |height="10px" | | ||
+ | |||
+ | |- bgcolor="#D0D0D0" | ||
+ | |||
+ | ! July !! Week 30 || 20.07.09 - 26.07.09 || || | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} | ||
+ | |||
+ | === To Do === | ||
+ | |||
+ | {|border="0" cellpadding="5" | ||
+ | |||
+ | |- bgcolor="silver" | ||
+ | |||
+ | ! colspan="2" | Tasks | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" | O || align="left" width="730"| Dummy Task | ||
+ | |||
+ | |- | ||
+ | |||
+ | |} |
Latest revision as of 05:23, 11 April 2023
Home < 4DUSandEndoscopeContents
Project Page for 4D Ultrasound with Endoscopic Overlay
Collaborators
Jan Gumprecht
- E-Mail: jgumprec(at)bwh.harvard.edu
- Location: Kyushu, Japan
- Timezone: GMT + 9
Jae-Sung Hung, PhD
- E-Mail: hong(at)dem.med.kyushu-u.ac.jp
- Location: Kyushu, Japan
- Timezone: GMT + 9
Nobuhiko Hata, PhD
- E-Mail: hata(at)bwh.harvard.edu
- Location: Boston, USA
- Timezone: GMT - 5
Haiying Liu
- E-Mail: hliu(at)bwh.harvard.edu
- Location: Boston, USA
- Timezone: GMT - 5
Yamada Atsushi, PhD
- E-Mail: yamada.atsushi(at)nitech.ac.jp
- Location: Nagoya, Japan
- Timezone: GMT + 9
Project Description
The goal of this project is to create a new 3D Slicer Module that can overlay patient registered 4D US volumes with endoscopic images.
The Project is divided into four part: 4D Ultrasound Volume Reconstruction, Patient-Image Registration, Endoscope Overlay, and Endoscope Calibration. All four parts will be accessable through a single 3D Slicer Module.
Overall Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Overlay and Endoscopic Calibration shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
New PC set up | x | Thu Jul, 30th | ||
New PC arrived | x | Tue Jul, 28th | ||
Week 31 | 27.07 - 02.08 | |||
Project Page created | x | Fri Jul, 24th | ||
July | Week 30 | 20.07.09 - 26.07.09 |
General To Do
Tasks | |
---|---|
O | Fill Project Page with Information |
O | Order new Frame Grabber Card |
DONE | Set Up New Computer |
DONE | Order new PC |
DONE | Create Project Page |
Details
- The following frame grabber card only provides grayscale images: I-O DATA GV-VCP3R/PCI (video decoder chip CX2388x) [1]
3D Slicer Module
- Responsible: Jan Gumprecht
Details
- The module is available through svn: http://svn.na-mic.org/NAMICSandBox/trunk/IGTLoadableModules/4DUsEndoNav/
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Source Code checked in to svn | x | Thu, Aug 6th | ||
Second Window works | x | Thu, Aug 6th | ||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Created First prototype of module | x | Fri, Jul 31st | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Close Second window with OS native commands, i.e. click the "X" in the right upper corner |
O | Comprehend Prostate nav module's source code |
DONE | Check in source to svn |
DONE | Include Second Window source code |
DONE | Create first prototyp of module, i.e. adapt IGTWizard Module |
4D Ultrasound Volume Reconstruction
- Responsible: Jan Gumprecht
Details
The project is described here: [[2]]
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Update Calibration and Spacing Handeling | ||||
New Commandline parameter added to grab a test image | x | Tue, Jul 30th | ||
All parameters of the calibration file are now used | x | Tue, Jul 28th | ||
OpenIGTLink is now externally, no local copy within the source code is used anymore | x | Mon, Jul 27th | ||
Week 31 | 27.07 - 02.08 | |||
Show demo of the system | ||||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Find Segmentation Fault |
O | Update Handling of Spacing |
O | Update Calibration Part |
DONE | Set up existing Hardware for first demo |
DONE | Update CalibrationFileReader |
Patient-Image Registration
- Responsible: Jae-Sung Hong
Details
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Start integration with 4D Ultrasound | ||||
Week 31 | 27.07 - 02.08 | |||
| ||||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |
Endoscope Overlay
- Responsible: Yamada Atsushi, Haiying Liu
Details
- OpenCV Module in Slicer3
- Multiple Camera Support in Slicer3
- Transrectal/Transperineal biopsy robot module merge
- Open CV Wiki
- Summer Second Display Project (Japanese)
Bug Fixes for the 3D Slicer Module
- There is a bug in OpenCV related to V4L2 devices:
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Overlay shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |
Endoscope overlay |
Endoscope Calibration
- Responsible: Dr. Yang
Details
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Calibration shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |