Difference between revisions of "4DUSandEndoscope"
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The Project is divided into four part: 4D Ultrasound Volume Reconstruction, Patient-Image Registration, Endoscope Overlay, and Endoscope Calibration. All four parts will be accessable through a single 3D Slicer Module. | The Project is divided into four part: 4D Ultrasound Volume Reconstruction, Patient-Image Registration, Endoscope Overlay, and Endoscope Calibration. All four parts will be accessable through a single 3D Slicer Module. | ||
− | [[Image:ModuleWorkflow.png | | + | [[Image:ModuleWorkflow.png | 600px ]] |
=== Overall Progress === | === Overall Progress === | ||
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=== General To Do === | === General To Do === | ||
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* Responsible: Jan Gumprecht | * Responsible: Jan Gumprecht | ||
=== Details === | === Details === | ||
+ | * The module is available through svn: http://svn.na-mic.org/NAMICSandBox/trunk/IGTLoadableModules/4DUsEndoNav/ | ||
=== Progress === | === Progress === | ||
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+ | | width="80px"| || colspan="2" width="550px"| Source Code checked in to svn ||align="center" width="50px" | x || width="120px" | Thu, Aug 6th | ||
+ | |||
+ | |- | ||
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+ | | width="80px"| || colspan="2" width="550px"| Second Window works ||align="center" width="50px" | x || width="120px" | Thu, Aug 6th | ||
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+ | | width="80px"| || colspan="2" width="550px"| Created First prototype of module ||align="center" width="50px" | x || width="120px" | Fri, Jul 31st | ||
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=== To Do === | === To Do === | ||
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− | | align="center" width="70px" | O || align="left"| | + | | align="center" width="70px" | O || align="left" | Close Second window with OS native commands, i.e. click the "X" in the right upper corner |
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− | | align="center" width="70px" | | + | | align="center" width="70px" bgcolor="#009900" | DONE || align="left" | Check in source to svn |
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+ | |- | ||
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+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left" | Include Second Window source code | ||
+ | |||
+ | |- | ||
+ | |||
+ | | align="center" width="70px" bgcolor="#009900" | DONE || align="left"| Create first prototyp of module, i.e. adapt IGTWizard Module | ||
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=== To Do === | === To Do === | ||
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=== To Do === | === To Do === | ||
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== Endoscope Overlay == | == Endoscope Overlay == | ||
− | * Responsible: | + | * Responsible: Yamada Atsushi, Haiying Liu |
=== Details === | === Details === | ||
* [http://www.na-mic.org/Wiki/index.php/OpenCV_Module_in_Slicer3 OpenCV Module in Slicer3] | * [http://www.na-mic.org/Wiki/index.php/OpenCV_Module_in_Slicer3 OpenCV Module in Slicer3] | ||
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* [http://opencv.willowgarage.com/wiki/ Open CV Wiki] | * [http://opencv.willowgarage.com/wiki/ Open CV Wiki] | ||
* [http://wiki.intelli-si.org/index.php?title=2009SummerSecondDisplayProject Summer Second Display Project] (Japanese) | * [http://wiki.intelli-si.org/index.php?title=2009SummerSecondDisplayProject Summer Second Display Project] (Japanese) | ||
+ | |||
+ | === Bug Fixes for the 3D Slicer Module === | ||
+ | |||
+ | * There is a bug in OpenCV related to V4L2 devices: | ||
+ | ** Here is the bugtrac with information: [[https://bugs.launchpad.net/ubuntu/+source/linux/+bug/260251]] | ||
+ | *** Somehow this is related to bttv 878 cards. OpenCV seem not to be able to handle all output of the card correctly | ||
+ | ** Here is the fix [[http://opencvlibrary.svn.sourceforge.net/viewvc/opencvlibrary/trunk/opencv/src/highgui/cvcap_v4l.cpp?r1=1604&r2=1609]] | ||
+ | *** Apply the changes of revision 1609 to the file # opencv/src/highgui/cvcap_v4l.cpp | ||
=== Progress === | === Progress === | ||
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=== To Do === | === To Do === | ||
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=== To Do === | === To Do === | ||
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Latest revision as of 05:23, 11 April 2023
Home < 4DUSandEndoscopeContents
Project Page for 4D Ultrasound with Endoscopic Overlay
Collaborators
Jan Gumprecht
- E-Mail: jgumprec(at)bwh.harvard.edu
- Location: Kyushu, Japan
- Timezone: GMT + 9
Jae-Sung Hung, PhD
- E-Mail: hong(at)dem.med.kyushu-u.ac.jp
- Location: Kyushu, Japan
- Timezone: GMT + 9
Nobuhiko Hata, PhD
- E-Mail: hata(at)bwh.harvard.edu
- Location: Boston, USA
- Timezone: GMT - 5
Haiying Liu
- E-Mail: hliu(at)bwh.harvard.edu
- Location: Boston, USA
- Timezone: GMT - 5
Yamada Atsushi, PhD
- E-Mail: yamada.atsushi(at)nitech.ac.jp
- Location: Nagoya, Japan
- Timezone: GMT + 9
Project Description
The goal of this project is to create a new 3D Slicer Module that can overlay patient registered 4D US volumes with endoscopic images.
The Project is divided into four part: 4D Ultrasound Volume Reconstruction, Patient-Image Registration, Endoscope Overlay, and Endoscope Calibration. All four parts will be accessable through a single 3D Slicer Module.
Overall Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Overlay and Endoscopic Calibration shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
New PC set up | x | Thu Jul, 30th | ||
New PC arrived | x | Tue Jul, 28th | ||
Week 31 | 27.07 - 02.08 | |||
Project Page created | x | Fri Jul, 24th | ||
July | Week 30 | 20.07.09 - 26.07.09 |
General To Do
Tasks | |
---|---|
O | Fill Project Page with Information |
O | Order new Frame Grabber Card |
DONE | Set Up New Computer |
DONE | Order new PC |
DONE | Create Project Page |
Details
- The following frame grabber card only provides grayscale images: I-O DATA GV-VCP3R/PCI (video decoder chip CX2388x) [1]
3D Slicer Module
- Responsible: Jan Gumprecht
Details
- The module is available through svn: http://svn.na-mic.org/NAMICSandBox/trunk/IGTLoadableModules/4DUsEndoNav/
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Source Code checked in to svn | x | Thu, Aug 6th | ||
Second Window works | x | Thu, Aug 6th | ||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Created First prototype of module | x | Fri, Jul 31st | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Close Second window with OS native commands, i.e. click the "X" in the right upper corner |
O | Comprehend Prostate nav module's source code |
DONE | Check in source to svn |
DONE | Include Second Window source code |
DONE | Create first prototyp of module, i.e. adapt IGTWizard Module |
4D Ultrasound Volume Reconstruction
- Responsible: Jan Gumprecht
Details
The project is described here: [[2]]
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Update Calibration and Spacing Handeling | ||||
New Commandline parameter added to grab a test image | x | Tue, Jul 30th | ||
All parameters of the calibration file are now used | x | Tue, Jul 28th | ||
OpenIGTLink is now externally, no local copy within the source code is used anymore | x | Mon, Jul 27th | ||
Week 31 | 27.07 - 02.08 | |||
Show demo of the system | ||||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Find Segmentation Fault |
O | Update Handling of Spacing |
O | Update Calibration Part |
DONE | Set up existing Hardware for first demo |
DONE | Update CalibrationFileReader |
Patient-Image Registration
- Responsible: Jae-Sung Hong
Details
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Start integration with 4D Ultrasound | ||||
Week 31 | 27.07 - 02.08 | |||
| ||||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |
Endoscope Overlay
- Responsible: Yamada Atsushi, Haiying Liu
Details
- OpenCV Module in Slicer3
- Multiple Camera Support in Slicer3
- Transrectal/Transperineal biopsy robot module merge
- Open CV Wiki
- Summer Second Display Project (Japanese)
Bug Fixes for the 3D Slicer Module
- There is a bug in OpenCV related to V4L2 devices:
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Overlay shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |
Endoscope overlay |
Endoscope Calibration
- Responsible: Dr. Yang
Details
Progress
Month | Week # | Start Date - End Date | Done | Date Done |
---|---|---|---|---|
Week 34 | 17.08 - 23.08 | |||
Week 33 | 10.08 - 16.08 | |||
Endoscopic Calibration shall be finished | ||||
August | Week 32 | 03.08.09 - 09.08.09 | ||
Week 31 | 27.07 - 02.08 | |||
July | Week 30 | 20.07.09 - 26.07.09 |
To Do
Tasks | |
---|---|
O | Dummy Task |