Difference between revisions of "NA-MIC JHU Skull Stripping Collaboration"
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| − | Back to [[NA-MIC_External_Collaborations]] | + | __NOTOC__ |
| + | Back to [[NA-MIC_External_Collaborations|NA-MIC External Collaborations]] | ||
[[Image:JHUSkullStripping.png|300px]] | [[Image:JHUSkullStripping.png|300px]] | ||
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[[Image:VoronoiVortices lowres.png]] | [[Image:VoronoiVortices lowres.png]] | ||
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| − | + | ==Grant#== | |
| − | ==Grant | ||
R21EB009900 | R21EB009900 | ||
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== Key Personel== | == Key Personel== | ||
| − | * JHU: Jerry L. Prince, PI | + | * JHU: Jerry L. Prince, PI, Aaron Carass, Min Chen, Snehashis Roy |
* NA-MIC: Nicole Aucoin, Ron Kikinis | * NA-MIC: Nicole Aucoin, Ron Kikinis | ||
==Funding Duration== | ==Funding Duration== | ||
08/01/2009-07/31/2011 | 08/01/2009-07/31/2011 | ||
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==Goals of the Project== | ==Goals of the Project== | ||
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The primary goals of this proposal are to enhance the NA-MIC code base with a segmentation algorithm that is capable of skull stripping and segmenting both cerebrum and cerebellum separately or collectively in a way which provides accuracy comparable to human raters. | The primary goals of this proposal are to enhance the NA-MIC code base with a segmentation algorithm that is capable of skull stripping and segmenting both cerebrum and cerebellum separately or collectively in a way which provides accuracy comparable to human raters. | ||
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==Aims== | ==Aims== | ||
#Rewrite SPECTRE using the NA-MIC software methodology for inclusion in Slicer 3D | #Rewrite SPECTRE using the NA-MIC software methodology for inclusion in Slicer 3D | ||
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#Parameters will be optimized in order for SPECTRE to perform well with a variety of differelty aquired data | #Parameters will be optimized in order for SPECTRE to perform well with a variety of differelty aquired data | ||
#Compare SPECTRE against all publically available (source or binary) skull-stripping software | #Compare SPECTRE against all publically available (source or binary) skull-stripping software | ||
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==Current progress== | ==Current progress== | ||
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==References== | ==References== | ||
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[[2009_Summer_Project_Week_Skull_Stripping | Summer 2009 Project Week]] | [[2009_Summer_Project_Week_Skull_Stripping | Summer 2009 Project Week]] | ||
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==Publications== | ==Publications== | ||
| − | + | * A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett and J.L. Prince, '''"A Joint Registration and Segmentation Approach to Skull Stripping"'''. Proceedings of the Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007. | |
| − | * | + | * K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, '''"Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities"'''. Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010. |
Latest revision as of 20:26, 24 May 2010
Home < NA-MIC JHU Skull Stripping CollaborationBack to NA-MIC External Collaborations
Grant#
R21EB009900
Key Personel
- JHU: Jerry L. Prince, PI, Aaron Carass, Min Chen, Snehashis Roy
- NA-MIC: Nicole Aucoin, Ron Kikinis
Funding Duration
08/01/2009-07/31/2011
Goals of the Project
The primary goals of this proposal are to enhance the NA-MIC code base with a segmentation algorithm that is capable of skull stripping and segmenting both cerebrum and cerebellum separately or collectively in a way which provides accuracy comparable to human raters.
Aims
- Rewrite SPECTRE using the NA-MIC software methodology for inclusion in Slicer 3D
- Complete the algorithms necessary for isolating and establishing a coordinate system on the cerebellum
- Parameters will be optimized in order for SPECTRE to perform well with a variety of differelty aquired data
- Compare SPECTRE against all publically available (source or binary) skull-stripping software
Current progress
References
Publications
- A. Carass, M.B. Wheeler, J. Cuzzocreo, P.-L. Bazin, S.S. Bassett and J.L. Prince, "A Joint Registration and Segmentation Approach to Skull Stripping". Proceedings of the Fourth IEEE International Symposium on Biomedical Imaging (ISBI 2007), Arlington, VA, April 12-15, 2007.
- K. Covington, E. McCreedy, M. Chen, A. Carass, N. Aucoin, and B.A. Landman, "Interfaces and Integration of Medical Image Analysis Frameworks: Challenges and Opportunities". Annual ORNL Biomedical Science and Engineering Conference (BSEC 2010), Oak Ridge, Tennessee, May 25-26, 2010.
