Difference between revisions of "AHM2010:NA-MIC Kit Update"

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=== ITK ===
 
=== ITK ===
  
−
* ITK turned 10 years old!
+
* [http://www.itk.org/Wiki/ITK_10th_Anniversary_Activities ITK turned 10 years old!]
−
* Slicer currently uses ITK 3.16
+
* Slicer currently uses [http://www.kitware.com/news/home/browse/ITK?2009_09_16&ITK+3.16+Released ITK 3.16]
−
* Label image classes
+
* [http://www.insight-journal.org/browse/publication/149 Label image classes], [http://hdl.handle.net/1926/584 Label map classes], Label map morphology
 +
* [http://hdl.handle.net/10380/3055 Region based Level Sets]
 +
* Improvements in Streaming large images
 
* QuadEdgeMesh spherical registration
 
* QuadEdgeMesh spherical registration
−
** Rigid
+
** Rigid (in NAMIC Sandbox)
−
** Deformable (Diffeomorphic Demons)
+
** Deformable (Diffeomorphic Demons) (in NAMIC Sandbox)
−
* Region based Level Sets
+
** Improvements in the QuadEdgeMesh filter class (in ITK to support the two above).
 
* Pixel coordinates consistency
 
* Pixel coordinates consistency
−
* Multi-threaded registration framework
+
* Multi-threaded registration framework (fixes)
 
** multi-threaded metrics
 
** multi-threaded metrics
 
** thread-safe transforms
 
** thread-safe transforms
 +
* Hessian-based shape descriptors
 +
* Fractal dimensions
 +
* [http://hdl.handle.net/1926/585 FFT based image reconstruction]
  
 
=== VTK ===
 
=== VTK ===
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** release branch being used in slicer3 nightly builds
 
** release branch being used in slicer3 nightly builds
 
** Many improvements and new features described in the [http://sourceforge.net/mailarchive/forum.php?thread_name=9FE12D1D-D52B-40F6-B793-D8AA9D2124CB%40uchicago.edu&forum_name=teem-users Teem 1.11 Change Log Message]
 
** Many improvements and new features described in the [http://sourceforge.net/mailarchive/forum.php?thread_name=9FE12D1D-D52B-40F6-B793-D8AA9D2124CB%40uchicago.edu&forum_name=teem-users Teem 1.11 Change Log Message]
−
* New [http://people.cs.uchicago.edu/~glk/ssp/ scale space crease] functionality
+
* Python wrappers (auto-generated by ctypeslib) now included in teem/python/ctypes; used previously for [[Two-tensor tractography in Slicer using Python and Teem]]
−
* New applications for COPD with Raul San Jose (see http://www.airwayinspector.org/)
+
* The tenGage kind (for doing convolution-based measurements in tensor fields) now includes direct computation of the fiber curving (tenGageFiberCurving) and fiber dispersion (tenGageFiberDispersion) indices used in [[2009_Summer_Project_Week_Slicer3_Fibre_Dispersion|Slicer module for the computation of fibre dispersion and curving measures]] (Peter Savadjiev BWH)
 +
* New [http://people.cs.uchicago.edu/~glk/ssp/ scale space partices] functionality, with applications to lung airway segmentation and white matter skeletonization from DTI
 +
* New applications of scale-space particles for COPD with Raul San Jose (see http://www.airwayinspector.org/)
 +
* New functionality from Thomas Schultz to implement fast crease surface extraction (see his recent TVCG paper [[http://www.ci.uchicago.edu/~schultz/papers/schultz-crease-2008.pdf]])
  
 
=== XNAT ===
 
=== XNAT ===
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** Improved memory footprint and efficiency.  
 
** Improved memory footprint and efficiency.  
 
** Refactored Search UI in the listing engine.  
 
** Refactored Search UI in the listing engine.  
 +
** Prebuilt XNAT images using VMWare and Virtualbox
 
* [http://code.google.com/p/xnatfs/ xnatfs] provides WebDav access to XNAT instances
 
* [http://code.google.com/p/xnatfs/ xnatfs] provides WebDav access to XNAT instances
−
 
  
 
=== GWE ===
 
=== GWE ===
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** Tutorials for the slicer developer community to port modules
 
** Tutorials for the slicer developer community to port modules
 
** [http://wiki.slicer.org/slicerWiki/index.php/Slicer3:Developers:Projects:QtSlicer/Gallery Gallery] and [http://wiki.slicer.org/slicerWiki/index.php/Slicer3:Developers:Projects:QtSlicer/Tutorials Tutorials]
 
** [http://wiki.slicer.org/slicerWiki/index.php/Slicer3:Developers:Projects:QtSlicer/Gallery Gallery] and [http://wiki.slicer.org/slicerWiki/index.php/Slicer3:Developers:Projects:QtSlicer/Tutorials Tutorials]
−
* More info on the [http://www.slicer.org/slicerWiki/index.php/Main_Page#News Slicer wiki News Page]
+
* More info on the [https://www.slicer.org/wiki/Main_Page#News Slicer wiki News Page]
 
* multi-camera view in Slicer (endoscopy application)
 
* multi-camera view in Slicer (endoscopy application)
  

Latest revision as of 17:10, 10 July 2017

Home < AHM2010:NA-MIC Kit Update
Back to AHM 2010

Goals

Information about NA-MIC Kit component developments over the past year so that developers will have an idea of what new features are available for their use.

ITK

VTK

Teem

XNAT

  • XNAT 1.4 RC3 available
    • More robust QC modeling via xnat:qcManualAssessorData.
    • New 'columns' variable for REST based listings.
    • LDAP support.
    • Improved memory footprint and efficiency.
    • Refactored Search UI in the listing engine.
    • Prebuilt XNAT images using VMWare and Virtualbox
  • xnatfs provides WebDav access to XNAT instances

GWE

  • Interactive experiments' results browser.
  • CSV and generated commands dumps and preview.
  • Support for LSF and Lava cluster DRMs.
  • Ability to override auto-discovered DRMs with configured ones.
  • Ability to override default database installation location.
  • Function to extract experiments' parameters from text files.
  • Operations to delete, pause and resume experiments.
  • Recommended to watch: 5 minutes demo video.

BatchMake

  • Improvement in the integration of grid computing using condor.
  • Semi-Automatic conversion of Slicer modules for batch processing
  • Parameter exploration is now possible
  • Execution of algorithms are faster

CMake/CPack/CTest/CDash

  • parallel ctest (ctest -j)
  • cpack
  • conversion to cmake in-progress
  • linkage between CTest and MIDAS in progress
    • Host large datasets for algorithm validation and performance testing
      • Demonstrated using RegisterImages

3D Slicer

  • List of new modules and features (TBD)
  • 3.4/3.4.1 release information
  • Extension Architecture and Extension Modules
  • ARRA Supplement Projects
  • Qt Port (lead in to Julien's 8:30 session)
    • Co-existence of KWWidgets and Qt
    • Creation of a subset of the needed Qt widgets
    • Full port in Qt of first modules
    • Design of the core architecture in Qt (plugin mechanism, Command line modules, widget libraries...)
    • Tutorials for the slicer developer community to port modules
    • Gallery and Tutorials
  • More info on the Slicer wiki News Page
  • multi-camera view in Slicer (endoscopy application)

Other Topics

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