Difference between revisions of "2010 Winter Project Week Stochastic Tractography"

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<gallery>
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[[File:Tract cloud.jpg|600px|thumb|left|tract cloud]]
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Image:PW-SLC2010.png|[[2010_Winter_Project_Week#Projects|Projects List]]
 
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Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
 
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Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
 
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</gallery>
 
  
 
==Key Investigators==
 
==Key Investigators==
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<h3>Objective</h3>
 
<h3>Objective</h3>
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Test new Stochastic Tractography algorithm created by Julien
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Julien has kindly updated his stochastic tractography algorithm in the Python Stochastic Tractography module in Slicer 3.5.  It needs to be tested and verified as working.
  
 
Andrew is currently updating the tutorial for this new method. Current progress can be found here: [[File:Stochastic Jan09.ppt| stochastic tutorial powerpoint]]
 
Andrew is currently updating the tutorial for this new method. Current progress can be found here: [[File:Stochastic Jan09.ppt| stochastic tutorial powerpoint]]
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==References==
 
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*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
 
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* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
 
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* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
 
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* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .
 
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Latest revision as of 18:19, 6 January 2010

Home < 2010 Winter Project Week Stochastic Tractography
tract cloud

Key Investigators

  • Previously: Julien von Siebenthal
  • BWH: Andrew Rausch, Marek Kubicki

Objective

Julien has kindly updated his stochastic tractography algorithm in the Python Stochastic Tractography module in Slicer 3.5. It needs to be tested and verified as working.

Andrew is currently updating the tutorial for this new method. Current progress can be found here: File:Stochastic Jan09.ppt

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