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| − | M==Course Title==
| + | Slicer Tokyo WS page has been moved to |
| − | [[Image:776px-Flyer SlicerWorkshop August2009.png|right|500 px]]
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| − | Introduction to Opensource Software Slicer and its Application to Image-Guided Therapy
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| − | == Course Syllabus ==
| + | http://wiki.na-mic.org/Wiki/index.php/Events:Slicer-Hands-On-Tokyo-2010 |
| − | The purpose of this tutorial is to provide the members of the research community with a practical experience of the image processing, 3D visualization, and Image-Guided Therapy capabilities of the Open Source 3D Slicer software platform. The curriculum is '''hands-on''' which means that participants are required to attend the workshop with a suitable laptop, preloaded with the software and sample data as specified below. Attendance is limited in order to ensure quality interactions between the faculty and participants.
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| − | == Course Faculty ==
| + | http://wiki.na-mic.org/Wiki/index.php/OsteoMark |
| − | *Sonia Pujol, Ph.D., Instructor in Radiology, Harvard Medical School
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| − | Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
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| − | *Lauren O'Donnell, Ph.D., Instructor in Radiology, Harvard Medical School
| + | [[Navigation Wand Project]] |
| − | Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
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| − | *Kathryn Hayes, M.S.E.
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| − | Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
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| − | *Haiying Liu, M.Eng., M.Sc.
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| − | Surgical Planning Laboratory, Brigham and Women's Hospital, Boston MA
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| − | == Logistics ==
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| − | *Date: Tuesday, August 25, 2009
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| − | *Time: 9am - 4pm
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| − | *Location: 1249 Boylston Street, Boston MA ([http://www.spl.harvard.edu/pages/Directions#Getting_to_1249_Boylston_Street Directions])
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| − | *Participants are required to come with their own computer (PC, Linux or MacOS).
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| − | *'''Registration is on a first-come, first-served basis and space is limited to 15 participants'''.
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| − | <span style="background-color: yellow"> '''To register to this event, please send an e-mail to slicer-training at bwh.harvard.edu''' </span> with your name, affiliation, contact information and the characteristics of the laptop you'll be bringing to the workshop.
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| − | == Agenda ==
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| − | ===Morning: Introduction to Slicer===
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| − | * 9:00 am - 9:10 am Preliminary session: Software and data installation trouble shooting
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| − | * 9:10 am - 9:30 am [[Media:Slicer3 Introduction IBMISPS2009 SoniaPujol.pdf | Slicer3 Overview and Applications ]](Sonia Pujol)
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| − | * 9:30 am - 10:30 am [[Media:Slicer3Course_DataLoadingAndVisualization_IBMISPS2009_SoniaPujol.pdf | Hands-on Session 1: Data Loading and 3D Visualization ]](Sonia Pujol)
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| − | * 10:30 am - 10:45 am Coffee-break
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| − | * 10:45 am - 11:30 am [[Media:Slicer3Course_DataLoadingAndVisualization_IBMISPS2009_SoniaPujol.pdf | Hands-on Session 2: Data Saving ]](Sonia Pujol)
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| − | * 11:30 am - 12:00 pm Discussion and Conclusion
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| − | * 12:00 -1pm Lunch Break
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| − | ===Afternoon: Introduction to Slicer IGT===
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| − | *1:00 - 1:30 pm [[media:Slicer-IGT-Overview-IBMSPSAug2009.ppt|'''Introduction: Why Slicer3 for your IGT research? An overview of Slicer3 for IGT.''']] (15 min. O'Donnell)
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| − | * 1:30 - 4:00 pm [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Neurosurgical-Planning '''Neurosurgical Planning and Guidance by Slicer''']
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| − | **Module 1-3 (1:30-2:45 pm) (K. Hayes)
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| − | # Loading and visualizing anatomical MRI data
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| − | # Incorporating fMRI data using image registration and thresholding
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| − | # Creating a 3D model of the tumour volume
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| − | * 2:45 - 3:00 pm Coffee-break
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| − | **Module 4-6 (3:00-4:00 pm) (H. Liu)
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| − | # Predicting the locations of brain structures using image registration and a brain atlas
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| − | # Incorporating brain fiber tractography from diffusion weighted images
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| − | # Annotating the preoperative plan and saving the scene
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| − | == Preparation for the Workshop ==
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| − | Please complete the following items prior to the course. Support will be provided as requested
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| − | *Software Installation: Please install the newest [http://www.slicer.org/pages/Special:SlicerDownloads Slicer3.4 release ]appropriate to the computer you will be bringing to the workshop:
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| − | ** Windows: Slicer3-3.4-2009-05-21-win32.exe
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| − | ** Mac OSX Darwin PPC: Slicer3-3.4.2009-05-21-darwin-ppc.tar.gz
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| − | ** Mac OSX Darwin Intel: Slicer3-3.4.2009-05-21-darwin-x86.tar.gz
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| − | ** Linux x86: Slicer3-3.4.2009-05-21-linux-x86.tar.gz
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| − | ** Linux x86-64: Slicer3-3.4.2009-05-21-linux-x86_64.tar.gz
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| − | The [http://www.slicer.org/slicerWiki/index.php/Slicer3:Downloads instructions for installing the Slicer3 program ] describe the different steps of the procedure on Mac OS, Linux and Windows.
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| − | Recommended configuration: Windows XP, Linux (x86 or x86_64), Mac OS (ppc or Intel), 2 GB of RAM and a dedicated graphic accelerator with 128 MB of on board graphic memory.
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| − | *Data to download: Please install the [http://www.slicer.org/slicerWiki/index.php/Image:Slicer3VisualizationDataset.zip Slicer3VisualizationDataset].
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| − | Back to [http://www.na-mic.org/Wiki/index.php/Events NA-MIC Events]
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