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| − | '''Project'''<nowiki>: Integration of NAMIC Kit and the 'Grid' </nowiki>
| + | <big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:Grid_Interface here]</font></big> |
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| − | '''Goals'''<nowiki>: </nowiki>
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| − | * Provide a tool for the NA-MIC kit to enable distributed execution of programs
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| − | * Supply interfaces to these tools via [[Slicer3:Execution_Model|Slicer3:Execution_Model]]
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| − | * Identify constraints and requirements for Slicer3 for cluster-based execution
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| − | '''Current Status'''<nowiki>: </nowiki>
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| − | * Tool (GridWizard) currently under development
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| − | * CLRegistration is considered a key use case for Grid computation for the NA-MIC kit
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| − | * Exact changes to [[Slicer3:Execution_Model|Slicer3:Execution_Model]] are under consideration
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| − | * Shown below is one proposal
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| − | * Another proposal is to use the <channel> element (in, out, inout)
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| − | * Lists and file globs may cause some problems in the Slicer3 display
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| − | '''Example of Grid Interface XML Awareness'''<nowiki>: >./gi-init -xml </nowiki>
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| − | <?xml version="1.0" encoding="utf-8"?>
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| − | <executable>
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| − | <category>execution environment</category>
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| − | <title>Slicer3 Grid Interface</title>
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| − | <description>Launches executables in a grid environment</description>
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| − | <version>1.0</version>
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| − | <documentationurl></documentationurl>
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| − | <license></license>
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| − | <contributor>Brendan Faherty</contributor>
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| − | <parameters>
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| − | <label>Grid Interface Parameters</label>
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| − | <description></description>
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| − | <flag>
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| − | <flag>-i</flag>
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| − | <description>Use to pass XML instructions through STDIN</description>
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| − | <label>XML STDIN</label>
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| − | </flag>
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| − | <file>
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| − | <flag>-f</flag>
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| − | <descriptions>use to pass XML instructuions through a file</description>
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| − | <label>XML File</label>
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| − | </file>
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| − | </executable>
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| − | The XML file that might be referenced via "gi-init -f JOB.xml" >cat CLRegistration.xml | |
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| − | <?xml version="1.0" encoding="utf-8"?>
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| − | <executable>
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| − | <executable>CLRegistration</executable>
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| − | <path>/path/to/CLRegistration</path>
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| − | <parameters>
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| − | <integer>
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| − | <flag>b</flag>
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| − | <value>30</value>
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| − | </integer>
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| − |
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| − | <integer>
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| − | <flag>s</flag>
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| − | <value>10000</value>
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| − | </integer>
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| − |
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| − | <string>
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| − | <flag>i</flag>
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| − | <longflag>iterations</longflag>
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| − | <value>200,100</value>
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| − | </string>
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| − |
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| − | <string>
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| − | <flag>l</flag>
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| − | <value>0.05,0.005</value>
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| − | </string>
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| − | <double>
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| − | <flag>t</flag>
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| − | <value>100.0</value>
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| − | </double>
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| − |
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| − | <file>
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| − | {! -- will be passed as "-Fixed Image1" --}
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| − | <flag>-Fixed</flag>
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| − | <name>Image1</name>
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| − | <protocol>srb</protocol>
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| − | <path>/home/Projects/NAMIC_0003/Files/Havard/active_morph/HUV109121/images/</path>
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| − | <transfer>singleton</transfer>
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| − | </file>
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| − |
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| − | <file>
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| − | {! -- will be passed as "-Moving Image2" --}
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| − | <flag>-Moving</flag>
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| − | <name>Image2</name>
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| − | <protocol>srb</protocol>
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| − | <path>/home/Projects/NAMIC_0003/Files/Havard/active_morph/HUV109121/images/</path>
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| − | <transfer>directory_non_recursive</transfer>
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| − | </file>
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| − |
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| − | <file>
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| − | {! -- will be passed as "-Output Data" --}
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| − | <flag>-Output</flag>
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| − | <name>Data</name>
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| − | <path>/home/Projects/NAMIC__0003/Files/Harvard/archive_morph/HUVA0123123/</path>
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| − | <protocol>srb</protocol>
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| − | <transfer>directory_recursive</transfer>
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| − | </file>
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| − | </parameters>
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| − |
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| − | </executable>
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| − | '''Team Members'''<nowiki>: </nowiki>
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| − | * Jeff Grethe- UCSD
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| − | * Neil Jones - UCSD
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| − | * Steve Pieper - BWH
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| − | * Daniel Blezek - GE
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