Difference between revisions of "2010 Summer Project Week Breakout Session:OpenIGTLink"

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Back to [[2010_Summer_Project_Week]]
 
Back to [[2010_Summer_Project_Week]]
  
−
Organizer: Junichi Tokuda<br/>
+
Organizer: Junichi Tokuda, Brigham and Women's Hospital<br/>
 
Date: Thursday, June 24, 2010<br/>
 
Date: Thursday, June 24, 2010<br/>
 
OpenIGTLink Home Page: [[OpenIGTLink]]
 
OpenIGTLink Home Page: [[OpenIGTLink]]
  
−
=Agenda=
+
=Time Table=
 +
----
 +
<br/>
 +
{| border="1" cellpadding="5" cellspacing="0" align="left"
 +
|-
 +
|align="left" style="background:#e0e0e0;" |9am-10am|| align="left" | OpenIGTLink Updates and Next Steps
 +
|-
 +
|align="left" style="background:#e0e0e0;" |10am-12pm|| align="left" | Tutorials and Hands-on session.
 +
|-
 +
|align="left" style="background:#e0e0e0;" |12pm-1pm|| align="left" align="left" style="background:#e0e0e0;"  | Break for lunch
 +
|-
 +
|align="left" style="background:#e0e0e0;" |1pm-2pm|| align="left" | Demos of working OpenIGTLink based systems
 +
|-
 +
|align="left" style="background:#e0e0e0;" |2pm-3pm|| align="left" | OpenIGTLink Library, 3D Slicer and other tools
 +
|-
 +
|align="left" style="background:#e0e0e0;" |3pm-4pm|| align="left" | Simulator Discussion
 +
|-
 +
|}
  
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Please note that this agenda is currently under construction and will be finalized by May 28th.
+
<br/>
  
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*9-10am:
+
=Agenda=
−
**Summary of OpenIGTLink
+
----
−
**Discussion on protocol version 2.
+
===9am-10am: OpenIGTLink Updates and Next Steps===
−
*10a-12pm: Hands-on session. Specifics of this session will be decided after the May 27th tcon.
+
*OpenIGTLink Updates
−
*12-1pm: Break for lunch
+
**Summary from Junichi's presentation on Tuesday
−
*1-2pm: Demos of working OpenIGTLink based systems
+
*Discussion on OpenIGTLink Protocol version 2
−
**AIST demos (TBD)
+
**Finalize version 2 protocol
−
*2-3pm: OpenIGTLink Library, 3D Slicer and other tools
+
***[[OpenIGTLink/ProtocolV2/Summary| Summary of version 2 protocol]]
−
 
+
***New support for image-guided systems
−
--------------
+
****Discussion on new commands is [[OpenIGTLink/Discussion/NewCommands|in progress]].
−
=Notes=
+
*****Ziv Yaniv (Geogetown) concerns about the fields with fixed length (especially in IMGMETA)
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==Discussion on OpenIGTLink Protocol version 2==
+
*****How about "length+string" approach?
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*Finalize version 2 protocol
+
****[[Stealthlink Protocol]] (for reference)
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**[[OpenIGTLink/ProtocolV2/Summary| Summary of version 2 protocol]]
+
***Matlab integration
−
**New support for image-guided systems
+
****There have been several requests for Matlab OpenIGTLink interface.
−
***Discussion on new commands is [[OpenIGTLink/Discussion/NewCommands|in progress]].
+
****[[OpenIGTLink/Matlab|Prototype Matlab/Octave interface]] is available.
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**Matlab integration
+
****New message type to support "remote procedure call"??
−
***There have been several requests for Matlab OpenIGTLink interface.
 
−
***[[OpenIGTLink/Matlab|Prototype Matlab/Octave interface]] is available.
 
−
***New message type to support "remote procedure call"??
 
−
**<font color="red">(Please put your agenda here)</font>
 
−
==Dissemination, collaboration etc.)==
 
−
The following item is part of NCIGT. We need inputs from Ron and Tina.
 
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*Tutorial (how we do now, and how it should be)
 
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*web presence (how we are, and how it should be)
 
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*Ctest (how we do)
 
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*Use Slicer ML or dedicated ML?
 
−
==Hands-on session (11am-12pm)==
 
−
*Opportunity for IGT developers to consult with OpenIGTLink experts and find solutions for their project.
 
−
==OpenIGTLink Library, 3D Slicer and other tools==
 
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*Features
 
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*Message classes
 
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*Example programs
 
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*Timeline
 
  
−
<hr/>
+
===10a-12pm: Tutorial and hands-on session===
 +
*Basic: OpenIGTLink tutorial using 3D Slicer and OpenIGTLink
 +
**Instructions are available in [https://www.slicer.org/wiki/Modules:OpenIGTLinkIF-Documentation-3.6 3D Slicer's OpenIGTLinkIF Documentation].
 +
**Tracking simulator
 +
**Imager simulator
 +
*Advanced: Matlab OpenIGTLink
 +
**Instructions are available in [[OpenIGTLink/Matlab| OpenIGTLink / Matlab Interface]].
 +
*5-10 minutes from each of the vendors on how they can use it?
 +
*Hands-on session
 +
**Planning to interface aurora tracker with Slicer using OpenIGTLink (Tamas)
 +
**Hands-on help in WPI system up and running (Greg will confirm)
  
−
=Demo Session=
+
===1-2pm: Demos of working OpenIGTLink based systems===
−
==AIST demos==
+
*IGSTK-OpenIGTLink by Haiying Liu
−
*(TBD)
+
*BrainLAB-3D Slicer Integration
  
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=Collaborators=
+
===2-3pm: OpenIGTLink Library, 3D Slicer and other tools===
−
*list of potential collaborator
+
*Transport Layer
 +
**Message queueing idea/transport layer (Patrick Georgetown, Steve to followup)
 +
*** For latest update on this, please refer to the CTK wiki: http://www.commontk.org/index.php/Documentation/Messaging
 +
*** '''Suggestion:''' use [http://msdn.microsoft.com/en-us/library/ff647328.aspx Message Bus] and [http://msdn.microsoft.com/en-us/library/ff649664(v=pandp.10).aspx Publisher/Subscriber] design pattern for system integration
 +
*** OpenIGTLink can be used to define the common message schema, and ZeroMQ can be used to handle the transportation layer abstraction
 +
*** [http://www.zeromq.org/ ZeroMQ] is a small and fast implementation of the [http://en.wikipedia.org/wiki/Advanced_Message_Queuing_Protocol Advanced Message Queuing Protocol] under the LGPL license
 +
*** It supports both synchronous and asynchronous messaging mode
 +
*** It supportsTCP, Multicast/PGM, Inter-process, and inter-thread transportation
 +
***  CMake version of library can be found here http://github.com/PatrickCheng/zeromq2
 +
*** API can be found here http://api.zeromq.org/zmq.html
 +
*Matlab OpenIGTLink interface
 +
**Currently it supports IMAGE and TRANSFORM
 +
**Potential applications?
 +
***Prototyping robot
 +
***Prototyping IGS system
 +
**Other language support
 +
***Java
 +
***C#
 +
***Python
  
 +
===3-4pm: Simulator Discussion===
 +
*Currently, only simple simulators are provided as example programs in the OpenIGTLink Library
 +
**Are they enough?
 +
**More sophisticated simulator?
  
−
=Participants=
 
−
*Junichi Tokuda
 
−
*Nobuhiko Hata
 
−
*Haiying Liu
 
  
−
<hr/>
 
  
 
=Teleconference on May 27 (Thu) 3pm-=
 
=Teleconference on May 27 (Thu) 3pm-=
 +
----
 
==Objectives==
 
==Objectives==
 
*Topics to discuss during the event
 
*Topics to discuss during the event
Line 68: Line 96:
  
 
==Participants==
 
==Participants==
−
*Please feel free to put your name here
+
Dan Marcus, Misha Milchenko, Tina, Nicole, Jim, Steve, Lorent, Greg, Wendy, Andre, Xiaodong, Leslie Holton, Tamas, Ron, Dominik, Isaiah
−
*Junichi Tokuda (BWH)
 
  
 
==Agenda==
 
==Agenda==
Line 76: Line 103:
 
***Short presentation about overview and updates of OpenIGTLink for those who are not in the presentation on Tuesday.
 
***Short presentation about overview and updates of OpenIGTLink for those who are not in the presentation on Tuesday.
 
**Discussion on protocol version 2.
 
**Discussion on protocol version 2.
−
***New features for 3D Slicer + commercial navigation systems integration
+
***New features for 3D Slicer
 
***Matlab
 
***Matlab
 
***Messages for sensor data (proposed by AIST project)
 
***Messages for sensor data (proposed by AIST project)
Line 96: Line 123:
 
**Order of sessions
 
**Order of sessions
  
−
* Action items by Project Week
+
==Minutes==
−
** List all potential applications
+
Suggestions for agenda from TCON:
−
** List all problems, issues regrading the current protocol
+
*Tracker simulator (Haiying)
−
** Feedbacks
+
*General session on simulators (maybe there should be a general discussion on this)
 +
*BrainLab VectorVision-Slicer integration using OpenIGTLink
 +
*Suggestions for hands-on session
 +
**hello world type demo application
 +
**5-10 minutes from each of the vendors on how they can use it?
 +
**compare OpenIGTLink with Steathlink protocol
 +
**hands-on help in WPI system up and running (Greg will confirm)
 +
**planning to interface aurora tracker with Slicer using OpenIGTLink (Tamas)
 +
**discussion about the implementation -- message queueing idea/transport layer (Patrick Georgetown, Steve to followup)
 +
*** Comments from Patrick
 +
**** For latest update on this, please refer to the CTK wiki: http://www.commontk.org/index.php/Documentation/Messaging
 +
**** '''Suggestion:''' use [http://msdn.microsoft.com/en-us/library/ff647328.aspx Message Bus] and [http://msdn.microsoft.com/en-us/library/ff649664(v=pandp.10).aspx Publisher/Subscriber] design pattern for system integration
 +
**** OpenIGTLink can be used to define the common message schema, and ZeroMQ can be used to handle the transportation layer abstraction
 +
**** [http://www.zeromq.org/ ZeroMQ] is a small and fast implementation of the [http://en.wikipedia.org/wiki/Advanced_Message_Queuing_Protocol Advanced Message Queuing Protocol] under the LGPL license
 +
**** It supports both synchronous and asynchronous messaging mode
 +
**** It supportsTCP, Multicast/PGM, Inter-process, and inter-thread transportation
 +
****  CMake version of library can be found here http://github.com/PatrickCheng/zeromq2
 +
**** API can be found here http://api.zeromq.org/zmq.html

Latest revision as of 18:07, 10 July 2017

Home < 2010 Summer Project Week Breakout Session:OpenIGTLink

Back to 2010_Summer_Project_Week

Organizer: Junichi Tokuda, Brigham and Women's Hospital
Date: Thursday, June 24, 2010
OpenIGTLink Home Page: OpenIGTLink

Time Table


9am-10am OpenIGTLink Updates and Next Steps
10am-12pm Tutorials and Hands-on session.
12pm-1pm Break for lunch
1pm-2pm Demos of working OpenIGTLink based systems
2pm-3pm OpenIGTLink Library, 3D Slicer and other tools
3pm-4pm Simulator Discussion


Agenda

9am-10am: OpenIGTLink Updates and Next Steps

  • OpenIGTLink Updates
    • Summary from Junichi's presentation on Tuesday
  • Discussion on OpenIGTLink Protocol version 2
    • Finalize version 2 protocol

10a-12pm: Tutorial and hands-on session

  • Basic: OpenIGTLink tutorial using 3D Slicer and OpenIGTLink
  • Advanced: Matlab OpenIGTLink
  • 5-10 minutes from each of the vendors on how they can use it?
  • Hands-on session
    • Planning to interface aurora tracker with Slicer using OpenIGTLink (Tamas)
    • Hands-on help in WPI system up and running (Greg will confirm)

1-2pm: Demos of working OpenIGTLink based systems

  • IGSTK-OpenIGTLink by Haiying Liu
  • BrainLAB-3D Slicer Integration

2-3pm: OpenIGTLink Library, 3D Slicer and other tools

  • Transport Layer
  • Matlab OpenIGTLink interface
    • Currently it supports IMAGE and TRANSFORM
    • Potential applications?
      • Prototyping robot
      • Prototyping IGS system
    • Other language support
      • Java
      • C#
      • Python

3-4pm: Simulator Discussion

  • Currently, only simple simulators are provided as example programs in the OpenIGTLink Library
    • Are they enough?
    • More sophisticated simulator?


Teleconference on May 27 (Thu) 3pm-

Objectives

  • Topics to discuss during the event
  • Finalize the schedule
  • Action items

Participants

Dan Marcus, Misha Milchenko, Tina, Nicole, Jim, Steve, Lorent, Greg, Wendy, Andre, Xiaodong, Leslie Holton, Tamas, Ron, Dominik, Isaiah

Agenda

  • Agenda in the project week
    • Summary of OpenIGTLink
      • Short presentation about overview and updates of OpenIGTLink for those who are not in the presentation on Tuesday.
    • Discussion on protocol version 2.
      • New features for 3D Slicer
      • Matlab
      • Messages for sensor data (proposed by AIST project)
      • Endoscope/camera control
    • Hands-on session. Specifics of this session will be decided after the May 27th tcon.
    • Demos of working OpenIGTLink based systems
    • OpenIGTLink Library, 3D Slicer and other tools
      • Matlab interfaces
      • 3D Slicer user interface
      • Tutorials
  • Demos (please feel free to add)
    • IGSTK demo from Haiying
    • AIST demo (may be video)
    • New 3D Slicer OpenIGTLink IF
  • Breakout session schedule
    • Make sure that all participants can sessions they need
    • Order of sessions

Minutes

Suggestions for agenda from TCON:

  • Tracker simulator (Haiying)
  • General session on simulators (maybe there should be a general discussion on this)
  • BrainLab VectorVision-Slicer integration using OpenIGTLink
  • Suggestions for hands-on session
    • hello world type demo application
    • 5-10 minutes from each of the vendors on how they can use it?
    • compare OpenIGTLink with Steathlink protocol
    • hands-on help in WPI system up and running (Greg will confirm)
    • planning to interface aurora tracker with Slicer using OpenIGTLink (Tamas)
    • discussion about the implementation -- message queueing idea/transport layer (Patrick Georgetown, Steve to followup)
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