Difference between revisions of "Training:2010tutorialcontest"

From NAMIC Wiki
Jump to: navigation, search
m (Fix MediaWiki formatting issue discovered while converting to GitHub Flavored Markdown using pandoc (via https://github.com/outofcontrol/mediawiki-to-gfm))
Tag: 2017 source edit
 
(23 intermediate revisions by 3 users not shown)
Line 4: Line 4:
 
[http://www.na-mic.org/Wiki/index.php/Summer_2010_Tutorial_Contest#List_of_submitted_tutorials Link to tutorials]
 
[http://www.na-mic.org/Wiki/index.php/Summer_2010_Tutorial_Contest#List_of_submitted_tutorials Link to tutorials]
  
−
<table>
+
{| class="wikitable sortable labelpage labelpagetable" border="1"
−
{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"}
 
 
|-
 
|-
−
|'''Tutorial Name'''||'''Slicer 3.6'''||'''Platform'''||'''Slicer License'''||'''Contact Info'''||'''Tutorial Template followed'''||'''Additional Directions Clear?'''||'''Primary Reviewer '''||'''Secondary Reviewer'''||'''Luis'''||'''CF'''||'''Steve'''||'''Sonia'''||'''Marc'''||'''Randy'''||'''Total'''
+
|'''Tutorial Name'''||'''Slicer 3.6'''||'''Platform'''||'''Slicer License'''||'''Contact Info'''||'''Tutorial Template followed'''||'''Additional Directions Clear?'''||'''QA Windows XP'''||'''QA Linux 64'''||'''QA Linux 32'''||'''QA mac'''
 
|-
 
|-
−
|'''Fiducials'''||yes||linux64, windows||yes||yes||yes||yes||Luis||Randy||||||||||||||
+
|'''Fiducials'''||yes||linux64, windows (linux32, mac)||yes||yes||yes||yes||6-25-2010||7-6-2010||7-6-2010||6-21-2010
 
|-
 
|-
−
|'''RSS (Robust Statistics Segmenter)'''||yes||linux64&32, windows, mac||yes||yes||yes||yes||Steve||Luis||||||||||||||
+
|'''RSS (Robust Statistics Segmenter)'''||yes||linux64&32, windows, mac||yes||yes||yes||yes||6-20-2010||6-20-2010||6-20-2010||6-20-2010
 
|-
 
|-
−
|'''Automatic SPHARM Shape Analysis in 3D Slicer'''||yes||linux||yes||yes||yes||yes||Randy||CF||||This tutorial requires the installation of the Slicer3.6 release, BatchMake, some external applications and the tutorial dataset. This is too much, if it is not in slicer, it is not a slicer module. All this downloading has to be more streamlined to attract any customers from FSL||||||||Missing underlying algorithm info, makes too many assumptions about what user knows, needs more educational content, harmonize style, better clinical goal statement||
+
|'''Automatic SPHARM Shape Analysis in 3D Slicer'''<ref>currently undergoing debugging; please see Mantis report for details http://www.na-mic.org/Bug/view.php?id=908</ref>||yes||linux||yes||yes||yes||yes||N/A||In Progress||In Progress||N/A
 
|-
 
|-
−
|'''Atlas Label Fusion & Surface Registration'''||yes||linux64, mac||yes||yes||yes||yes||CF ||Marc||  || Nice instructions how to get started (get slicer, get data). Tutorial format well explained. Slice 8: Beautiful overview of algorithmic strategy and its mapping to modules involved. Smooth and well put together, '''a candidate for the winning tutorial.'''  ||||||||||
+
|'''Atlas Label Fusion & Surface Registration'''||yes||linux64(&32), mac, (windows)||yes||yes||yes||yes||7-15-2010||6-22-2010||7-15-2010||6-22-2010
 
|-  
 
|-  
−
|'''Stochastic Tractography'''||yes||linux64, (mac)||yes||yes||yes||yes||Sonia||Steve||||||||||||||
+
|'''Stochastic Tractography'''||yes||linux64, (mac)||yes||yes||yes||yes||N/A||6-21-2010||6-25-2010||6-21-2010
 
|-
 
|-
−
|'''Robot-assisted MRI-guided prostate biopsy'''||yes||windows, (mac)||yes||yes||yes||yes||Steve||Sonia||||||||||||||
+
|'''Robot-assisted MRI-guided prostate biopsy'''||yes||windows, (mac), (linux64&32)||yes||yes||yes||yes|||6-22-2010||7-15-2010||7-15-2010||6-22-2010
 
|-
 
|-
−
|'''GAMBIT: Group-wise Automatic Mesh-Based analysis of cortIcal Thickness'''||yes||linux||yes||yes||yes||yes||Randy||CF||||Seems very nice, but "The executable “ShapeWorksRun” needs to be copied to the “GAMBIT_Executables_1.0” folder  seems complicated, and I cannot find this script in the downloaded "Shape works" directory, only a set of windows ext files there.||||||||||
+
|'''GAMBIT: Group-wise Automatic Mesh-Based analysis of cortIcal Thickness'''<ref>currently undergoing debugging; please see Mantis report for details http://www.na-mic.org/Bug/view.php?id=908</ref>||yes||linux||yes||yes||yes||yes||N/A||In Progress||In Progress||N/A
 
|-
 
|-
−
|'''White Matter Lesion Segmentation'''||yes||linux64&32||yes||yes||yes||yes||Luis||Marc||||||||||||||
+
|'''White Matter Lesion Segmentation'''<ref>currently undergoing debugging; please see Mantis report for details http://www.na-mic.org/Bug/view.php?id=908</ref>||yes||linux64&32||yes||yes||yes||yes||N/A||In Progress||In Progress||N/A
 
|-
 
|-
−
|'''Image-overlay Guided Needle Insertion'''||yes||windows||yes||yes||yes||yes||Sonia||Steve||||||||||||||
+
|'''Image-overlay Guided Needle Insertion'''||yes||windows||yes||yes||yes||yes||6-21-2010||N/A||N/A||N/A
 
|-
 
|-
−
|'''Fluid Mechanics Tractography'''||yes, but as a trunk build in NAMIC sandbox||mac||yes||yes||yes||yes||CF ||Sonia||    || Slide 4: First link broken (how to download slicer 3.6), and the pointer to the data set is hidden in another tutorial, without an explicit link to that tutorial. Slide 5: "To get the module code: Download the experimental branch, Slicer3.6- hagemanFMTractography, from the Slicer 3 svn and run getbuildtest.tcl script" but no instruction how to get to that svn, or how to run svn.  ||    ||  ||   ||   ||
+
|'''Fluid Mechanics Tractography'''<ref>currently undergoing debugging due to problems with CMakelists.txt file</ref>||yes, but as a trunk build in NAMIC sandbox||mac||yes||yes||yes||yes||N/A||N/A||N/A||In Progress
 
|-
 
|-
−
|'''End to End Meshing Workflow'''||yes||linux64&32, mac||yes||yes||yes||yes||Marc||Randy||||||||||||||
+
|'''End to End Meshing Workflow'''||yes||linux64&32, mac||yes||yes||yes||yes||N/A||6-20-2010||6-20-2010||6-20-2010
 
|-
 
|-
−
|'''Longitudinal Lesion Comparison'''||yes||linux64&32, mac||yes||yes||yes||yes||Marc||Luis||||||||||||||
+
|'''Longitudinal Lesion Comparison'''||yes||linux64&32, mac, (windows)||yes||yes||yes||yes||7-15-2010||6-25-2010||6-25-2010||6-23-2010
−
|-
+
|}
−
</table>
+
 
 +
*'''N/A''' means that tutorial is not working on the corresponding platform.
 +
 
 +
-----

Latest revision as of 19:27, 11 April 2023

Home < Training:2010tutorialcontest

Summer 2010 Project Week Panel

Back to Project Week Page

Link to tutorials

Tutorial Name Slicer 3.6 Platform Slicer License Contact Info Tutorial Template followed Additional Directions Clear? QA Windows XP QA Linux 64 QA Linux 32 QA mac
Fiducials yes linux64, windows (linux32, mac) yes yes yes yes 6-25-2010 7-6-2010 7-6-2010 6-21-2010
RSS (Robust Statistics Segmenter) yes linux64&32, windows, mac yes yes yes yes 6-20-2010 6-20-2010 6-20-2010 6-20-2010
Automatic SPHARM Shape Analysis in 3D Slicer[1] yes linux yes yes yes yes N/A In Progress In Progress N/A
Atlas Label Fusion & Surface Registration yes linux64(&32), mac, (windows) yes yes yes yes 7-15-2010 6-22-2010 7-15-2010 6-22-2010
Stochastic Tractography yes linux64, (mac) yes yes yes yes N/A 6-21-2010 6-25-2010 6-21-2010
Robot-assisted MRI-guided prostate biopsy yes windows, (mac), (linux64&32) yes yes yes yes 6-22-2010 7-15-2010 7-15-2010 6-22-2010
GAMBIT: Group-wise Automatic Mesh-Based analysis of cortIcal Thickness[2] yes linux yes yes yes yes N/A In Progress In Progress N/A
White Matter Lesion Segmentation[3] yes linux64&32 yes yes yes yes N/A In Progress In Progress N/A
Image-overlay Guided Needle Insertion yes windows yes yes yes yes 6-21-2010 N/A N/A N/A
Fluid Mechanics Tractography[4] yes, but as a trunk build in NAMIC sandbox mac yes yes yes yes N/A N/A N/A In Progress
End to End Meshing Workflow yes linux64&32, mac yes yes yes yes N/A 6-20-2010 6-20-2010 6-20-2010
Longitudinal Lesion Comparison yes linux64&32, mac, (windows) yes yes yes yes 7-15-2010 6-25-2010 6-25-2010 6-23-2010
  • N/A means that tutorial is not working on the corresponding platform.
  1. ↑ currently undergoing debugging; please see Mantis report for details http://www.na-mic.org/Bug/view.php?id=908
  2. ↑ currently undergoing debugging; please see Mantis report for details http://www.na-mic.org/Bug/view.php?id=908
  3. ↑ currently undergoing debugging; please see Mantis report for details http://www.na-mic.org/Bug/view.php?id=908
  4. ↑ currently undergoing debugging due to problems with CMakelists.txt file
Retrieved from "https://www.na-mic.org/w/index.php?title=Training:2010tutorialcontest&oldid=98900"