Difference between revisions of "2010-Slicer-UNCDuke"

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__NOTOC__
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{| class="wikitable2" border="1" cellpadding="8" cellspacing="1"
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| colspan="4"|[[Image:Duke-logo.jpg]][[Image:UNC-logo.png]]
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|-
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| style="width:25%" |[[Image:NAMIC.jpg‎]]
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| style="width:25%" |[[Image:Logo_nac.gif‎]]
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| style="width:25%" |[[Image:NCIGTlogo.gif]]
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| style="width:25%" |[[Image:Catalyst_logo_final.jpg|150px]]
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|}
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<br>
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{| border="1" cellpadding="8" cellspacing="1"
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| style="background: #ebeced"| [[Image:TumorArcuate.jpg|400px]]
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| style="background: #ebeced" colspan="2" align="center"| <b>Slicer Hands-On Tutorial, August 11, 2010, North Carolina</b>
 
== Introduction ==  
 
== Introduction ==  
−
A one-day Slicer tutorial will be held at UNC and Duke University on August 11, 2010. The primary objective of these 2 Slicer tutorial events is to introduce users at both universities to the Slicer environment, with a particular focus on its use for visualization, fiber tracking, and editing.
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Two half-day Slicer tutorials will be offered at UNC and Duke University on August 11, 2010. The primary objective of these 2 Slicer tutorial events is to introduce users at both universities to the Slicer environment, with a particular focus on its use for visualization, fiber tracking, and editing.
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|}
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=Schedule=
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{| border="1" cellpadding="5"
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|- style="background:#ebeced; color:#663300; font-size:120%" align="center"
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| style="width:10%" | '''Morning Time''' @ Duke
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| style="width:10%" | '''Afternoon Time''' @ UNC
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| style="width:80%" colspan="2"| '''Topic'''
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|-
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| style="background:#efefef; color:#663300"| '''08:15-08:30'''
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| style="background:#efefef; color:#663300"| '''01:15-01:30'''
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| style="background:#FBF7BB; color:#522200"  align="left"|
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:::Setup
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|-
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| style="background:#efefef; color:#663300"| '''08:30-09:00'''
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| style="background:#efefef; color:#663300"| '''01:30-02:00'''
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| style="background:#FBF7BB; color:#522200" align="left"|
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:::[[media:Slicer-Overview-NC-2010-08-11.ppt|Slicer and the NA-MIC Kit]]  (Ron Kikinis)
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|-
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| style="background:#efefef; color:#663300"| '''09:00-09:30'''
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| style="background:#efefef; color:#663300"| '''02:00-02:30'''
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| style="background:#FBF7BB; color:#522200" align="left"|
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:::Basic Visualization ([[media:Slicer3_DataLoadingAndVisualization_SoniaPujol3.6.pdf|PDF]], [[media:Slicer3_DataLoadingAndVisualization_SoniaPujol3.6.ppt|PPT]]) (Ipek Oguz)
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|-
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| style="background:#efefef; color:#663300"| '''09:30-10:00'''
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| style="background:#efefef; color:#663300"| '''02:30-03:00'''
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| style="background:#FBF7BB; color:#522200" align="left"|
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:::Slicer interactive editing ([[media:InteractiveEditorTutorial__Slicer3.6_SoniaPujol.pdf|PDF]], [[media:InteractiveEditorTutorial__Slicer3.6_SoniaPujol.ppt|PPT]]) (Steve Pieper)
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|-
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| style="background:#efefef; color:#663300"| '''10:00-10:30'''
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| style="background:#efefef; color:#663300"| '''03:00-03:30'''
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| style="background:#FBF7BB; color:#522200" align="left"|
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:::Break
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|-
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| style="background:#efefef; color:#663300"| '''10:30-11:00'''
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| style="background:#efefef; color:#663300"| '''03:30-04:00'''
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| style="background:#FBF7BB; color:#522200" align="left"|
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:::Manual Registration ([[media:ManualRegistration_Slicer3.6.pdf|PDF]], [[media:ManualRegistration_Slicer3.6.ppt|PPT]]) (Julien Finet)
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|-
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| style="background:#efefef; color:#663300"| '''11:00-12:00'''
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| style="background:#efefef; color:#663300"| '''04:00-05:00'''
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| style="background:#FBF7BB; color:#522200" align="left"|
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:::DTI in Slicer ([[media:DiffusionMRITutorial_Slicer3.6.1_SoniaPujol_Aug2010.pdf|PDF]], [[media:DiffusionMRITutorial_Slicer3.6.1_SoniaPujol_Aug2010.ppt|PPT]]) (Martin Styner)
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|}
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== Faculty ==
 
== Faculty ==
 
* [http://www.spl.harvard.edu/~kikinis Ron Kikinis, M.D.]
 
* [http://www.spl.harvard.edu/~kikinis Ron Kikinis, M.D.]
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* [http://www.med.unc.edu/psych/directories/faculty/ipek-oguz-phd Ipek Oguz, Ph.D.]
 
* [http://www.spl.harvard.edu/~pieper Steve Pieper, Ph.D.]
 
* [http://www.spl.harvard.edu/~pieper Steve Pieper, Ph.D.]
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* [http://www.kitware.com/company/team/finet.html Julien Finet, M.S.]
 
* [http://www.cs.unc.edu/~styner/ Martin Styner, Ph.D.]
 
* [http://www.cs.unc.edu/~styner/ Martin Styner, Ph.D.]
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* [http://www.med.unc.edu/psych/directories/faculty/ipek-oguz-phd Ipek Oguz, Ph.D.]
 
−
 
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== Tentative Agenda  ==
 
−
 
−
A 3-3.5 hour tutorial event at each site
 
−
 
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* Morning 8:30-12 @ Duke
 
−
**NA-MIC kit overview
 
−
**Slicer basic visualization
 
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**Slicer interactive editing
 
−
**Slicer DTI
 
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* Afternoon 1:30-5pm @ UNC
 
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**NA-MIC kit overview
 
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**Slicer basic visualization
 
−
**Slicer interactive editing
 
−
**Slicer DTI
 
  
 
== Logistics ==  
 
== Logistics ==  
  
 
* To register for the tutorial @ Duke, please email Allan Johnson: gjohnson at duke.edu
 
* To register for the tutorial @ Duke, please email Allan Johnson: gjohnson at duke.edu
−
* Location @ Duke: TBA
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* Location @ Duke: 1st floor, Room D-106, Levine Science Research Center (LSRC)
 
* To register for the tutorial @ UNC, please email Ipek Oguz: ipek at cs.unc.edu
 
* To register for the tutorial @ UNC, please email Ipek Oguz: ipek at cs.unc.edu
 
* Location @ UNC: Brooks Building, Rm 141 (Faculty Conference Room)
 
* Location @ UNC: Brooks Building, Rm 141 (Faculty Conference Room)
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** Map: Go to [http://www.unc.edu/maps/ UNC maps] and search for Brooks Building
  
 
== Preparations ==  
 
== Preparations ==  
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Please complete the following items prior to the workshop.  
 
Please complete the following items prior to the workshop.  
  
−
Software: Please bring your own laptop with the Slicer3.6 version appropriate to the computer you will be bringing to the workshop.
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'''Software''': Please bring your own laptop with the Slicer3.6 version appropriate to the computer you will be bringing to the workshop.
 
The version of Slicer to download will be posted a few days before the event.
 
The version of Slicer to download will be posted a few days before the event.
  
−
*Windows XP;
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*Windows XP/7: http://www.na-mic.org/Slicer/Download/Nightly/Slicer3-3.6-2010-08-05-win32.exe
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*Mac OSX Darwin Intel:
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*Mac OSX Darwin Intel: http://www.na-mic.org/Slicer/Download/Nightly/Slicer3-3.6-2010-08-05-darwin-x86.tar.gz
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*Linux 32:  
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*Linux 32: http://www.na-mic.org/Slicer/Download/Nightly/Slicer3-3.6-2010-08-05-linux-x86.tar.gz
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*Linux 64:  
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*Linux 64: http://www.na-mic.org/Slicer/Download/Nightly/Slicer3-3.6-2010-08-05-linux-x86_64.tar.gz
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'''Data''': Please install the [[media:Slicer3VisualizationDataset.zip | 3D Visualization dataset]], the [[media:EditorTutorialDataset.zip | Interactive Editor dataset]], [[media:DiffusionDataset.zip| Diffusion dataset]],  and the [https://www.slicer.org/wiki/File:Slicer3_Tutorial_ManualRegistration_ExampleDataset.zip‎ Manual Registration dataset].
  
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Data: Please install the [[media:Slicer3VisualizationDataset.zip | 3D Visualization dataset]], the [[media:EditorTutorialDataset.zip | Interactive Editor dataset]] and the [[media:DiffusionDataset.zip| Diffusion ataset]]
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'''Tutorials''': Please download the tutorials in the table above, in PDF or PPT format.
  
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Hardware minimum requirement: 2GB of main memory and graphics hardware acceleration with 256 MB of dedicated graphics memory (nvidia preferred).
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'''Hardware''' minimum requirement: 2GB of main memory and graphics hardware acceleration with 256 MB of dedicated graphics memory (nvidia preferred).<br>
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Recommended: 4-8GB of main memory and 512MB or more of dedicated graphics memory with a nvidia gpu.
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'''Recommended hardware: 4-8GB of main memory and 512MB or more of dedicated graphics memory with a nvidia gpu.'''
  
 
== Slicer3 Training Survey ==
 
== Slicer3 Training Survey ==

Latest revision as of 17:09, 10 July 2017

Home < 2010-Slicer-UNCDuke


Duke-logo.jpgUNC-logo.png
NAMIC.jpg Logo nac.gif NCIGTlogo.gif Catalyst logo final.jpg


TumorArcuate.jpg Slicer Hands-On Tutorial, August 11, 2010, North Carolina

Introduction

Two half-day Slicer tutorials will be offered at UNC and Duke University on August 11, 2010. The primary objective of these 2 Slicer tutorial events is to introduce users at both universities to the Slicer environment, with a particular focus on its use for visualization, fiber tracking, and editing.

Schedule

Morning Time @ Duke Afternoon Time @ UNC Topic
08:15-08:30 01:15-01:30
Setup
08:30-09:00 01:30-02:00
Slicer and the NA-MIC Kit (Ron Kikinis)
09:00-09:30 02:00-02:30
Basic Visualization (PDF, PPT) (Ipek Oguz)
09:30-10:00 02:30-03:00
Slicer interactive editing (PDF, PPT) (Steve Pieper)
10:00-10:30 03:00-03:30
Break
10:30-11:00 03:30-04:00
Manual Registration (PDF, PPT) (Julien Finet)
11:00-12:00 04:00-05:00
DTI in Slicer (PDF, PPT) (Martin Styner)


Faculty

Logistics

  • To register for the tutorial @ Duke, please email Allan Johnson: gjohnson at duke.edu
  • Location @ Duke: 1st floor, Room D-106, Levine Science Research Center (LSRC)
  • To register for the tutorial @ UNC, please email Ipek Oguz: ipek at cs.unc.edu
  • Location @ UNC: Brooks Building, Rm 141 (Faculty Conference Room)
    • Map: Go to UNC maps and search for Brooks Building

Preparations

Please complete the following items prior to the workshop.

Software: Please bring your own laptop with the Slicer3.6 version appropriate to the computer you will be bringing to the workshop. The version of Slicer to download will be posted a few days before the event.

Data: Please install the 3D Visualization dataset, the Interactive Editor dataset, Diffusion dataset, and the Manual Registration dataset.

Tutorials: Please download the tutorials in the table above, in PDF or PPT format.

Hardware minimum requirement: 2GB of main memory and graphics hardware acceleration with 256 MB of dedicated graphics memory (nvidia preferred).
Recommended hardware: 4-8GB of main memory and 512MB or more of dedicated graphics memory with a nvidia gpu.

Slicer3 Training Survey

Click here to take the Slicer3 Training Survey

Back to NA-MIC Events

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