Difference between revisions of "Tidbits"

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m (Created page with 'To run EMSegmenter from the command line: ./Slicer3-build/lib/Slicer3/Plugins/EMSegmentCommandLine --mrmlSceneFileName ../EMSegmenterT1Example/EMSeg-Brain-MRT1.mrml --targetVolum…')
 
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To run EMSegmenter from the command line:
 
./Slicer3-build/lib/Slicer3/Plugins/EMSegmentCommandLine --mrmlSceneFileName ../EMSegmenterT1Example/EMSeg-Brain-MRT1.mrml --targetVolumeFileNames SPGR-1178.nrrd --resultVolumeFileName 1178_SPGR_emseg.nrrd
 
  
 
 
Note: To get access to SPM variables in Matlab (while running SPM, of course - bring them into command-line namespace) do this:<br />
 
- global so <enter> <br />
 
- load spm <enter> <br />
 

Latest revision as of 20:10, 13 July 2018

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