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== Slicer4: Annotation module - Priority List for December release ==
 
== Slicer4: Annotation module - Priority List for December release ==
  
−
'''This list includes to-be-done features, open issues and other related things to do.'''
+
'''This list includes to-be-done features, open issues and other related things to do.''' High and Medium priorities target the December release.
  
 
<font color=red>HIGH</font>
 
<font color=red>HIGH</font>
−
# Annotation hierarchies [dependency: QTreeModel by Nicole]
+
# <strike>Scenesnapshot/scene annotation. See [http://wiki.slicer.org/slicerWiki/index.php/Slicer4:SceneModule here] for an example.</strike>
−
#* GUI: Nice tree view with functionality to create/delete hierarchies, drag'n'drop annotations, view/edit/(un-)lock/delete annotations
+
#* <strike>Will integrate functionality in Annotation Module - review existing functionality for saving/loading views and merge it with screenshot in annotation tool</strike>
−
#* Logic: include the an invisible top-level hierarchy, create appropriate hierarchy nodes when annotations are created
+
#* <strike>Ron will work with somebody else to create fancy user interface  </strike>
−
# Property dialog to set text, line and point properties [dependency: #1]
+
# '''2D widget interaction'''
−
#* GUI: Align the layout better
+
#* '''When using the lightbox view the Annotations do not get displayed properly yet, only fiducials work (work in progress by Kitware)'''
−
#* Logic: Update DisplayNode according to settings in dialog and together with hierarchies
+
#* <strike>When switching slice orientation the Annotations do not get displayed properly yet</strike>
−
# Generate Report with option to select specific Annotations [dependency: #1]
+
#* <strike>'''When widget is not displayed completely in an orientation but intersects with the specific slice, show the intersection as a dot (01/14/11)'''</strike>
−
# Implement Save/Load MRML Scene with Annotations [dependency: #1, #2]
+
#* <strike>Sometimes after placement of fiducials funky behavior when switching to different widget [dependency: VTK Widget Fiesta 5/6th November 2010]</strike>
 +
# <strike>Annotation hierarchies [dependency: QTreeModel by Nicole]</strike>
 +
#* <strike>GUI: Nice tree view with functionality to create/delete hierarchies, drag'n'drop annotations, view/edit/(un-)lock/delete annotations</strike>
 +
#* <strike>Logic: include an invisible top-level hierarchy, create appropriate hierarchy nodes when annotations are created, properly delete MRML nodes + widgets</strike>
 +
# '''Property dialog to set text, line and point properties (01/14/11)'''
 +
#* '''GUI: Align the layout better (01/14/11)'''
 +
#* '''Logic: Update DisplayNode according to settings in dialog and together with hierarchies (01/14/11)'''
 +
# <strike>Generate Report with option to select specific Annotations [dependency: #3]</strike>
 +
# <strike>Implement Save/Load MRML Scene with Annotations [dependency: #3, #4]</strike>
 +
# <strike>vtkTextWidget [dependency: VTK Widget Fiesta 5/6th November 2010]</strike>
 +
#* <strike>Add option to attach text to a specific point in 2D/3D space and ability to configure the line</strike>
 +
# <strike>'''vtkRulerWidget (work in progress by Kitware)'''</strike>
 +
#* <strike>'''Show the dividers on a fixed scale according to millimeter or cm'''</strike>
 +
# '''Tutorial'''
  
 
<font color=orange>MEDIUM</font>
 
<font color=orange>MEDIUM</font>
−
 
+
# <strike>Use own file extension to save annotations (Ron)</strike
 +
#* <strike>Ideas: .anot8 (annot-eight) .mian (medical informatics annotation) .sa (slicer annotation) .san (slicer annotation)</strike>
 +
#** <strike>.saf (slicer annotation format) .sat (slicer annotation tool) are already taken:[http://www.fileinfo.com/extension/saf 1]</strike>
 +
# Add vtkMRMLAnnotationDicomNode to fetch a header from a loaded volume and store it inside the MRML tree (file/add volume has some of that functionality already). (TBD)
 +
# <strike>Implement "reset viewer" button - viewer is returned to setting when annotation was last modified </strike>
  
 
<font color=green>LOW</font>
 
<font color=green>LOW</font>
 +
# <strike>Add Screenshot functionality for 2D Viewers (maybe directly in Slicer instead?)</strike>
 +
# <strike>Add Screenshot and Description Annotations for a new Snapshot module</strike>
 +
#* <strike>MRML: Introduce vtkMRMLAnnotationSnapshotNode then vtkMRMLAnnotationDescriptionNode and vtkMRMLAnnotationScreenshotNode to implement functionality</strike>
 +
#** <strike>These will not be displayed in the 3D Scene or 2D viewer - only in the new Snapshot module or during loading of scenes as a browser</strike>
 
# Include new Slicer mouse mode toolbox [dependency: Mouse mode toolbox by Wendy]
 
# Include new Slicer mouse mode toolbox [dependency: Mouse mode toolbox by Wendy]
 +
# <strike>Use the new Widget API to place/interact with widgets [dependency: VTK Widget Fiesta 5/6th November 2010]</strike>
 
# Get-together with Mike Halle to discuss AIM Annotation tools (IPAD, ClearCanvas plugin)
 
# Get-together with Mike Halle to discuss AIM Annotation tools (IPAD, ClearCanvas plugin)
 +
# Replace click-counter by stack to set different mouse icons according to the placement/interaction state of widget
 +
# Automatic alignment of annotations (Ron)
 +
#* example: SPL Atlas java viewer (see screenshot http://wiki.na-mic.org/Wiki/index.php/File:Atlasjavaviewerannotations.png)
 +
# Add a scalar color bar annotation
 +
# Export to AIM language (Ron)
 +
#* See https://cabig.nci.nih.gov/tools/AIM for details
 +
# Adding histology slides as annotations (http://www.youtube.com/user/kitware#p/a/CBEE89D886EBFFBF/0/up9UPM4Wb44) (Ron)
 +
# Make a demo with /data/Dropbox/RonsExamples/NeuroDemoMayExperiments/2010-03-4Views.mrml (Ron)
 +
# Use new LUT created by Michael Halle (Ron)
 
# Generate more UML diagrams
 
# Generate more UML diagrams

Latest revision as of 21:50, 12 January 2011

Home < Projects:ARRA:miAnnotation:PriorityList

Slicer4: Annotation module - Priority List for December release

This list includes to-be-done features, open issues and other related things to do. High and Medium priorities target the December release.

HIGH

  1. Scenesnapshot/scene annotation. See here for an example.
    • Will integrate functionality in Annotation Module - review existing functionality for saving/loading views and merge it with screenshot in annotation tool
    • Ron will work with somebody else to create fancy user interface
  2. 2D widget interaction
    • When using the lightbox view the Annotations do not get displayed properly yet, only fiducials work (work in progress by Kitware)
    • When switching slice orientation the Annotations do not get displayed properly yet
    • When widget is not displayed completely in an orientation but intersects with the specific slice, show the intersection as a dot (01/14/11)
    • Sometimes after placement of fiducials funky behavior when switching to different widget [dependency: VTK Widget Fiesta 5/6th November 2010]
  3. Annotation hierarchies [dependency: QTreeModel by Nicole]
    • GUI: Nice tree view with functionality to create/delete hierarchies, drag'n'drop annotations, view/edit/(un-)lock/delete annotations
    • Logic: include an invisible top-level hierarchy, create appropriate hierarchy nodes when annotations are created, properly delete MRML nodes + widgets
  4. Property dialog to set text, line and point properties (01/14/11)
    • GUI: Align the layout better (01/14/11)
    • Logic: Update DisplayNode according to settings in dialog and together with hierarchies (01/14/11)
  5. Generate Report with option to select specific Annotations [dependency: #3]
  6. Implement Save/Load MRML Scene with Annotations [dependency: #3, #4]
  7. vtkTextWidget [dependency: VTK Widget Fiesta 5/6th November 2010]
    • Add option to attach text to a specific point in 2D/3D space and ability to configure the line
  8. vtkRulerWidget (work in progress by Kitware)
    • Show the dividers on a fixed scale according to millimeter or cm
  9. Tutorial

MEDIUM

  1. Use own file extension to save annotations (Ron)</strike
    • Ideas: .anot8 (annot-eight) .mian (medical informatics annotation) .sa (slicer annotation) .san (slicer annotation)
      • .saf (slicer annotation format) .sat (slicer annotation tool) are already taken:1
  2. Add vtkMRMLAnnotationDicomNode to fetch a header from a loaded volume and store it inside the MRML tree (file/add volume has some of that functionality already). (TBD)
  3. Implement "reset viewer" button - viewer is returned to setting when annotation was last modified

LOW

  1. Add Screenshot functionality for 2D Viewers (maybe directly in Slicer instead?)
  2. Add Screenshot and Description Annotations for a new Snapshot module
    • MRML: Introduce vtkMRMLAnnotationSnapshotNode then vtkMRMLAnnotationDescriptionNode and vtkMRMLAnnotationScreenshotNode to implement functionality
      • These will not be displayed in the 3D Scene or 2D viewer - only in the new Snapshot module or during loading of scenes as a browser
  3. Include new Slicer mouse mode toolbox [dependency: Mouse mode toolbox by Wendy]
  4. Use the new Widget API to place/interact with widgets [dependency: VTK Widget Fiesta 5/6th November 2010]
  5. Get-together with Mike Halle to discuss AIM Annotation tools (IPAD, ClearCanvas plugin)
  6. Replace click-counter by stack to set different mouse icons according to the placement/interaction state of widget
  7. Automatic alignment of annotations (Ron)
  8. Add a scalar color bar annotation
  9. Export to AIM language (Ron)
  10. Adding histology slides as annotations (http://www.youtube.com/user/kitware#p/a/CBEE89D886EBFFBF/0/up9UPM4Wb44) (Ron)
  11. Make a demo with /data/Dropbox/RonsExamples/NeuroDemoMayExperiments/2010-03-4Views.mrml (Ron)
  12. Use new LUT created by Michael Halle (Ron)
  13. Generate more UML diagrams
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