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| − | Isaiah Norton, Golby Lab, Department of Neurosurgery
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| − | contact: [mailto:inorton@bwhd-tharvardd0tedu inorton @bwh d-t harvard d0t edu]
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| − |
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| − | ==Slicer Notes==
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| − | Things that aren't fleshed-out enough to go into Mantis, or if I can't fully reproduce yet, can't share the data right now, etc..
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| − |
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| − | ===Bugs===
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| − | *Can't load high-res MEMPRAGE MRI from MGH for AG case in Slicer3. workaround: loaded fine in slicer2, then saved as nrrd. DicomToNRRD also works.
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| − | *CropVolume changes image intensity
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| − | ===Feature Wishes===
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| − | *Better transform handling in the reg meta-code: should sort out any hierarchies for cross-registration (ie, want to register to something that is already inside another transform)
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| − | *Put models inside appropriate transform after generation
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| − | *Editing volume inside of transform - don't want to have to move source volumes out of transform for every Editor use in a complex scene with transform hierarchies.
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| − | *Slice intersections in 3D viewer, ie lines/gray/highlight/etc. at the intersection point (helps with depth perception). In Slicer3 this is only supported in 2d widgets.
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| − | *intelligent fiducial picking: for example, jump to nearest local min/max in some search region (like spm)
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| − | *option to load nrrd immediately after DicomToNrrd (cli need tweak to add post-handling options?)
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| − | *dynamic (python) module reload
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| − | *debug: to work around MRML scene-load crashes need either 1) cl debug option to output each tag as it is being processed, so that I know which node causes the crash or 2) load prompt for each node in the scene (like the Windows XP selective dll load)
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| − | ====DTI====
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| − | *Tract (hyperstreamline) intersection with MR planes (highlighted with color change, ring, etc.)
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| − | *FiberBundle editing!!!
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| − | **context menu on (eg) Ctrl-R click in 3D view to save tracts (could also be used for annotation functionality)
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| − | ===Thoughts===
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| − | *[http://www.slicer.org/slicerWiki/index.php/User:Inorton:Slicer4DTI DTI in Slicer4]
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| − | ==How-to-do-this==
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| − | *[LoadBrainPointsIntoSlicer]
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| − |
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| − | ==Slicer4==
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| − | *[[User:inorton/Slicer4:Misc]]
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| − | *[[User:inorton/Slicer4:Thoughts]]
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| − | *[[User:inorton/Slicer4:Python]]
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| − | *[[User:inorton/Slicer4:CodeNotes]]
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| − |
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| − | ===Learning Qt===
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| − | *[[User:inorton/PyQtNotes]]
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| − | *http://doc.qt.nokia.com/4.7/how-to-learn-qt.html
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| − | *http://doc.qt.nokia.com/4.7/tutorials.html
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| − |
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| − | *http://www.cs.usfca.edu/~afedosov/qttut/
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| − |
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| − | ===Internal Coding===
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| − | *http://www.slicer.org/slicerWiki/index.php/Slicer4:Developers
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| − | *http://www.slicer.org/slicerWiki/index.php/Slicer4:QtPort
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| − | *http://www.slicer.org/slicerWiki/index.php/Slicer4:QtPort/Tutorials
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| − | *http://www.na-mic.org/Wiki/index.php/QtAugust2010
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| − | *http://www.slicer.org/slicerWiki/index.php/Slicer3:Loadable_Modules:HOWTO
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| − |
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| − | ===External links===
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| − | *http://techbase.kde.org/Policies/Library_Code_Policy#D-Pointers
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| − | *http://techbase.kde.org/Policies/Binary_Compatibility_Issues_With_C++#Using_a_d-Pointer (Qt arch)
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| − | *http://en.wikipedia.org/wiki/Opaque_pointer
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| − |
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| − | ==Other Notes==
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| − |
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| − | [[User:inorton/Slicer3SuperBuildWindows7|SuperBuilding Slicer3 on Windows 7]]
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| − | [[Slicer3WrapITKPython|Slicer3 with WrapITK for Python ITK wrapping]]
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| − |
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| − | [[Tidbits]]
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| − |
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| − | [[UseIntelMKLwithMatlabForFasterSPM]]
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| − |
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| − | [[ExternalConnectionsToSPL]]
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| − | [[LinuxScreenCaptureMovieNotes]]
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| − | [[CTPhantomSegmentation]]
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| − | [[LoadAnalyzeIntoBrainLab]]
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| − |
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| − | [[LoadfMRIIntoInstaTrak]]
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| − |
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| − | [[ImageConversionUtilities]]
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