Difference between revisions of "User:Inorton/dMRI Software List"

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=NA-MIC software=
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*Slicer
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** http://www.slicer.org
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* teem:
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** the Slicer3 interactive DTI implementation is based largely on teem through the vtkTeem libraries.
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** http://teem.sourceforge.net/
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* ITK Tensor tools:
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**http://www.itk.org/Doxygen/html/group__TensorObjects.html
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* GTRACT
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** command-line tools for DTI pipeline processing
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** http://www.nitrc.org/projects/vmagnotta/
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** http://wiki.slicer.org/slicerWiki/index.php/GTRACT_V4
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* UNC DTI Tools (FiberViewer):
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** http://www.niral.unc.edu/
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** http://www.ia.unc.edu/dev/download/index.htm
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* Utah DTIProcess
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** http://www.nitrc.org/projects/dtiprocess/
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=Open source software=
 
=Open source software=
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*BioImageSuite
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** Interface: GUI
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** License: GPL
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** http://www.bioimagesuite.org/
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*DTI-query and CINCH
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** Interface: preprocessing: command line; selection: GUI
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** License: BSD-like
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** http://graphics.stanford.edu/projects/dti/software/
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*DTI-TK
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** Interface: command line
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** License: GPL
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** http://www.nitrc.org/projects/dtitk
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* FMRIB Diffusion Toolbox
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** Licence: non-commercial (http://www.fmrib.ox.ac.uk/fsl/fsl/licence.html)
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** http://www.fmrib.ox.ac.uk/fsl/fdt/index.html
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*Camino
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** Interface: primarily command-line
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** License: OSI Artistic License 2.0
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** http://www.cs.ucl.ac.uk/research/medic/camino/
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*BrainVisa
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** Interface: pipeline builder, GUI (Anatomist)
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** License: mix of GPL/LGPL/BSD  http://brainvisa.info/doc/brainvisa/en/help/readme.html
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** http://www.brainvisa.info/
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* DiPy
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** Interface: programming library.
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** License: New BSD (3-clause)
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** http://nipy.sourceforge.net/dipy/documentation.html
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* MITK-DI
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** Interface: GUI
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** ITK-based DI processing classes including Q-ball
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** License: BSD
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** http://www.mitk.org/wiki/DiffusionImaging
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* MedInria
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** License: 4-clause BSD
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** http://med.inria.fr/
  
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=Closed source free software=
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=Closed-source free software=
 
*TrackVis / DTI-Toolkit
 
*TrackVis / DTI-Toolkit
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** Purpose: DTI analysis
 
**http://www.trackvis.org
 
**http://www.trackvis.org
 
*DTI Studio
 
*DTI Studio
 
**http://www.mristudio.org/
 
**http://www.mristudio.org/
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*MevisLab
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** Purpose: module-based, domain-specific application SDK. DTI modules exist.
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** Neurosurgery application (from IEEE Viz 2010): http://www.youtube.com/watch?v=aIgFS1S97GQ
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** http://www.mevislab.de
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** nb: free version has some restrictions on module signing and number of modules.
  
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=Commercial software with DTI capability=
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=Commercial software with DTI functionality=
 
* Brain Voyager QX
 
* Brain Voyager QX
 
**http://www.brainvoyager.com/products/brainvoyagerqx.html
 
**http://www.brainvoyager.com/products/brainvoyagerqx.html
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* Analyze
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**http://mayoresearch.mayo.edu/mayo/research/robb_lab/analyze.cfm
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**http://www.analyzedirect.com/
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* BrainMagix
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**http://www.imagilys.com/
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* Prism Clinical
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** http://www.prismclinical.com
  
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=Clinical Software with DTI capability=
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=Clinical Software with DTI functionality=
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*BrainLab iPlan
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* BrainLab iPlan
 
**http://www.brainlab.com/
 
**http://www.brainlab.com/
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*NordicNeuroLab NordicICE and BrainEx
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* NordicNeuroLab NordicICE and BrainEx
 
**http://www.nordicneurolab.com/
 
**http://www.nordicneurolab.com/
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*Siemens syngo DTI Tractography
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* Siemens "syngo DTI Tractography"
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**http://bit.ly/dJxamE  [[https://www.medical.siemens.com/webapp/wcs/stores/servlet/PSOptionProductDisplayView?catalogId=-11&catTree=100010,1007660,12754,1024365&langId=-11&productId=191673&productType=6&storeId=10001 original link]]
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**[[https://www.medical.siemens.com/webapp/wcs/stores/servlet/PSOptionProductDisplayView?catalogId=-11&catTree=100010,1007660,12754,1024365&langId=-11&productId=191673&productType=6&storeId=10001 link]]
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* GE "DTI - complete functional neuroassessment"
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** [[https://www2.gehealthcare.com/portal/site/usen/menuitem.c94c459110e10489eb7d9d1074c84130/?vgnextoid=0cdb74f0f8750210VgnVCM10000024dd1403RCRD&productID=89081a8029a30210VgnVCM10000024dd1403____&channelID=ABC  link]]
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=dMRI File Formats=
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==NRRD==
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http://teem.sourceforge.net/nrrd/format.html
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http://www.vtk.org/Wiki/Getting_Started_with_the_NRRD_Format
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==Nifti==
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[[http://groups.google.com/group/dtitk/web/data-format DTI-TK]]
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[[http://nifti.nimh.nih.gov/nifti-1/documentation/nifti1diagrams_v2.pdf Nifti Matrix storage]]
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[[http://sourceforge.net/mailarchive/forum.php?thread_name=D6C04AE4-7FDC-47DA-8986-DC5C27498AB4%40uchicago.edu&forum_name=teem-users Discussion on teem-users]]

Latest revision as of 16:04, 6 November 2013

NA-MIC software

Open source software

Closed-source free software

Commercial software with DTI functionality

Clinical Software with DTI functionality


dMRI File Formats

NRRD

http://teem.sourceforge.net/nrrd/format.html http://www.vtk.org/Wiki/Getting_Started_with_the_NRRD_Format

Nifti

[DTI-TK]

[Nifti Matrix storage]

[Discussion on teem-users]

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