Difference between revisions of "Events: Johns Hopkins University Seminar April 2011"
From NAMIC Wiki
| (41 intermediate revisions by 6 users not shown) | |||
| Line 1: | Line 1: | ||
| − | {| class=" | + | {| class="wikitable" |
| − | | style="width: | + | | colspan="4"|[[image:Jhu-logo.jpg]] |
| − | | style="width: | + | |- |
| + | | style="width:25%" |[[Image:NAMIC.jpg]] | ||
| + | | style="width:25%" |[[Image:Logo_nac.gif]] | ||
| + | | style="width:25%" |[[Image:NCIGTlogo.gif]] | ||
| + | | style="width:25%" |[[Image:Catalyst_logo_final.jpg|150px]] | ||
|} | |} | ||
| − | |||
| − | |||
== Introduction == | == Introduction == | ||
| − | A one-day Slicer tutorial will be held at Johns Hopkins University on April 5, 2011. The primary objective of this event is to introduce users to the Slicer environment, with a particular focus on 3D modelling and Diffusion Tensor Imaging | + | A one-day Slicer tutorial will be held at Johns Hopkins University on Tuesday, April 5, 2011. The primary objective of this event is to introduce users to the Slicer environment, with a particular focus on 3D modelling and Diffusion Tensor Imaging. |
== Faculty == | == Faculty == | ||
*[http://www.spl.harvard.edu/~kikinis Ron Kikinis, M.D.] | *[http://www.spl.harvard.edu/~kikinis Ron Kikinis, M.D.] | ||
*[http://lmi.bwh.harvard.edu/~spujol/ Sonia Pujol, Ph.D.] | *[http://lmi.bwh.harvard.edu/~spujol/ Sonia Pujol, Ph.D.] | ||
| + | *[http://www.spl.harvard.edu/pages/People/nicole Nicole Aucoin, M.Sc.] | ||
== Tentative Agenda == | == Tentative Agenda == | ||
| − | *8:00- | + | *8:00-8:25 am Computer setup assistance by the instructors |
| − | * | + | *8:25-8:30 am Welcome and presentation of day activities (Ron Kikinis) |
| − | * | + | *8:30-10:00 am Hands-on session 1: [[media:Slicer3_DataLoadingAndVisualization_JHU2011_SoniaPujol.pdf |Data Loading and 3D Visualization (Sonia Pujol)]] |
| − | + | *10:00-10:30 am Coffee Break | |
| − | + | *10:30-11:45 am Hands-on session 2: [[media:DiffusionMRITutorial_JHU2011_SoniaPujol.pdf| Diffusion Tensor Imaging Analysis (Sonia Pujol)]] | |
| − | * | + | *12:00-1:00 pm Institute for Computational Medicine, Distinguished Lecture Series: Ron Kikinis, MD: [[Events:JHU-2011-04-05|3D Slicer]] <br> Location: Hackerman Hall B17 |
| − | * | + | *1:00-1:30 pm Lunch |
| − | *12: | + | *1:30-2:30 pm Hands-on session 3: [[media:WhiteMatterExplorationNeurosurgicalPlanning_JHU2011_SoniaPujol.pdf | Exploring peritumoral white matter fibers for neurosurgical planning (Sonia Pujol)]] |
| − | *1:30-2: | + | *2:30-3:00 pm IGT session (Ron Kikinis) |
| − | *3:00-3: | + | **Demo of the OpenIGTLink simulator. |
| − | *3: | + | **How to connect your tracker to Slicer |
| − | *4: | + | **[http://www.slicer.org/slicerWiki/images/b/bc/OpenIGTLinkTutorial_Slicer3.6.2_JunichiTokuda_Dec2010.ppt OpenIGTLink Tutorial slides (ppt)]. |
| + | **[http://wiki.slicer.org/slicerWiki/index.php/Modules:OpenIGTLinkIF-3.6-Simulators Link to the OpenIGTLink Data simulator]. | ||
| + | |||
| + | *3:00-3:30 pm Coffee Break | ||
| + | *3:30-4:00 pm Additional Slicer functionalities: [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Fiducials_TutorialContestSummer2010 Fiducials], [http://wiki.na-mic.org/Wiki/index.php/File:JHUWorkshopApril2011-4DUltrasoundSlides.tar.gz 4D Imaging] (Nicole Aucoin) | ||
| + | *4:00-4:15 pm Slicer4 update (Ron Kikinis) | ||
| + | *4:15-4:45 pm Questions from the audience and concluding remarks | ||
== Logistics == | == Logistics == | ||
*Date: April 5, 2011 | *Date: April 5, 2011 | ||
*Location: Institute for Computational Medicine, Johns Hopkins University | *Location: Institute for Computational Medicine, Johns Hopkins University | ||
| − | *'''Registration''': To sign-up for this event, please fill in the [[media:RegistrationForm_SlicerWorkshop_JHU_Apr5_2011.doc | registration form]] and send it by e-mail to | + | *'''Registration''': To sign-up for this event, please fill in the [[media:RegistrationForm_SlicerWorkshop_JHU_Apr5_2011.doc | registration form]] and send it by e-mail to Kathryn Hayes (hayes at bwh.harvard.edu) before April 1st. |
| + | |||
| + | == Room Configuration - Clark 314 == | ||
| + | 24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power. | ||
| + | |||
| + | [[Image:clark314_1.jpg|250px]] | ||
| + | [[Image:clark314_2.jpg|250px]] | ||
| + | [[Image:clark314_3.jpg|250px]] | ||
== Preparations == | == Preparations == | ||
*Hardware<span style="background-color: yellow"> The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. | *Hardware<span style="background-color: yellow"> The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. | ||
| − | All participants are required to come with their own laptop computer and install the software and datasets prior to the event.</span> | + | All participants are required to come with their own laptop computer and install the software and datasets prior to the event.</span> A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance. |
| − | *Software installation: | + | *Software installation: Please install the Slicer3.6.3 release version appropriate to the laptop computer you'll be bringing to the workshop |
| − | *Datasets: | + | * Windows: [http://www.na-mic.org/Slicer/Download/Release/win32/Slicer3-3.6.3-2011-03-04-win32.exe Slicer3-3.6.3-2011-03-04-win32.exe] |
| + | * Linux 64: [http://www.na-mic.org/Slicer/Download/Release/linux-x86_64/Slicer3-3.6.3-2011-03-04-linux-x86_64.tar.gz Slicer3-3.6.3-2011-03-04-linux-x86_64.tar.gz] | ||
| + | * Linux 32: [http://www.na-mic.org/Slicer/Download/Release/linux-x86/Slicer3-3.6.3-2011-03-04-linux-x86.tar.gz Slicer3-3.6.3-2011-03-04-linux-x86.tar.gz ] | ||
| + | * Mac Darwin: [http://www.na-mic.org/Slicer/Download/Release/darwin-x86/Slicer3-3.6.3-2011-03-04-darwin-x86.tar.gz Slicer3-3.6.3-2011-03-04-darwin-x86.tar.gz ] | ||
| + | |||
| + | *Datasets: Please download the [[media:Slicer3VisualizationDataset.zip | 3D Visualization dataset]],[[media:DiffusionDataset.zip| Diffusion dataset]], and [[media:WhiteMatterExplorationData.zip| White Matter Exploration dataset]] in preparation for the workshop. | ||
== Slicer Community == | == Slicer Community == | ||
Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer community] prior to the workshop, for questions and feature requests related to the software. | Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer community] prior to the workshop, for questions and feature requests related to the software. | ||
| + | |||
| + | For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu). | ||
== Slicer3 Training Survey == | == Slicer3 Training Survey == | ||
| Line 48: | Line 71: | ||
[http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey] | [http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey] | ||
| − | + | == Registrants == | |
| + | # Kathleen Friel, PhD, Columbia University Medical Center | ||
| + | # Joseph G. Hennessey, PhD, Johns Hopkins University | ||
| + | # Paweena U-Thainual, Johns Hopkins University | ||
| + | # Ann Majewicz, Johns Hopkins University | ||
| + | # Nathan Cho, Johns Hopkins University | ||
| + | # Seth Billings, Johns Hopkins University | ||
| + | # Reza Seifabadi, MSc, Johns Hopkins University | ||
| + | # Shoko Yoshida, MD, Johns Hopkins University | ||
| + | # Chunwoo Kim, Johns Hopkins University | ||
| + | # Siamak Ardekani, Johns Hopkins University | ||
| + | # Michael Bowers, Johns Hopkins University | ||
| + | # Ehsan Azimi, Johns Hopkins University | ||
| + | # Tian Xia, Johns Hopkins University | ||
| + | # Johnny Hsu, Johns Hopkins University | ||
| + | # Piyawan Moonjaita, Johns Hopkins University | ||
| + | |||
| + | Back to [http://www.na-mic.org/Wiki/index.php/Events NA-MIC Events] | ||
Latest revision as of 20:17, 9 August 2011
Home < Events: Johns Hopkins University Seminar April 2011
| |||
|
|
|
|
Contents
Introduction
A one-day Slicer tutorial will be held at Johns Hopkins University on Tuesday, April 5, 2011. The primary objective of this event is to introduce users to the Slicer environment, with a particular focus on 3D modelling and Diffusion Tensor Imaging.
Faculty
Tentative Agenda
- 8:00-8:25 am Computer setup assistance by the instructors
- 8:25-8:30 am Welcome and presentation of day activities (Ron Kikinis)
- 8:30-10:00 am Hands-on session 1: Data Loading and 3D Visualization (Sonia Pujol)
- 10:00-10:30 am Coffee Break
- 10:30-11:45 am Hands-on session 2: Diffusion Tensor Imaging Analysis (Sonia Pujol)
- 12:00-1:00 pm Institute for Computational Medicine, Distinguished Lecture Series: Ron Kikinis, MD: 3D Slicer
Location: Hackerman Hall B17 - 1:00-1:30 pm Lunch
- 1:30-2:30 pm Hands-on session 3: Exploring peritumoral white matter fibers for neurosurgical planning (Sonia Pujol)
- 2:30-3:00 pm IGT session (Ron Kikinis)
- Demo of the OpenIGTLink simulator.
- How to connect your tracker to Slicer
- OpenIGTLink Tutorial slides (ppt).
- Link to the OpenIGTLink Data simulator.
- 3:00-3:30 pm Coffee Break
- 3:30-4:00 pm Additional Slicer functionalities: Fiducials, 4D Imaging (Nicole Aucoin)
- 4:00-4:15 pm Slicer4 update (Ron Kikinis)
- 4:15-4:45 pm Questions from the audience and concluding remarks
Logistics
- Date: April 5, 2011
- Location: Institute for Computational Medicine, Johns Hopkins University
- Registration: To sign-up for this event, please fill in the registration form and send it by e-mail to Kathryn Hayes (hayes at bwh.harvard.edu) before April 1st.
Room Configuration - Clark 314
24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power.
Preparations
- Hardware The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.
All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.
- Software installation: Please install the Slicer3.6.3 release version appropriate to the laptop computer you'll be bringing to the workshop
- Windows: Slicer3-3.6.3-2011-03-04-win32.exe
- Linux 64: Slicer3-3.6.3-2011-03-04-linux-x86_64.tar.gz
- Linux 32: Slicer3-3.6.3-2011-03-04-linux-x86.tar.gz
- Mac Darwin: Slicer3-3.6.3-2011-03-04-darwin-x86.tar.gz
- Datasets: Please download the 3D Visualization dataset, Diffusion dataset, and White Matter Exploration dataset in preparation for the workshop.
Slicer Community
Participants are invited to join the Slicer user and Slicer developer community prior to the workshop, for questions and feature requests related to the software.
For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu).
Slicer3 Training Survey
Click here to take the Slicer3 Training Survey
Registrants
- Kathleen Friel, PhD, Columbia University Medical Center
- Joseph G. Hennessey, PhD, Johns Hopkins University
- Paweena U-Thainual, Johns Hopkins University
- Ann Majewicz, Johns Hopkins University
- Nathan Cho, Johns Hopkins University
- Seth Billings, Johns Hopkins University
- Reza Seifabadi, MSc, Johns Hopkins University
- Shoko Yoshida, MD, Johns Hopkins University
- Chunwoo Kim, Johns Hopkins University
- Siamak Ardekani, Johns Hopkins University
- Michael Bowers, Johns Hopkins University
- Ehsan Azimi, Johns Hopkins University
- Tian Xia, Johns Hopkins University
- Johnny Hsu, Johns Hopkins University
- Piyawan Moonjaita, Johns Hopkins University
Back to NA-MIC Events
