Difference between revisions of "Events: Johns Hopkins University Seminar April 2011"

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== Introduction ==  
 
== Introduction ==  
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*[http://www.spl.harvard.edu/~kikinis Ron Kikinis, M.D.]
 
*[http://www.spl.harvard.edu/~kikinis Ron Kikinis, M.D.]
 
*[http://lmi.bwh.harvard.edu/~spujol/ Sonia Pujol, Ph.D.]
 
*[http://lmi.bwh.harvard.edu/~spujol/ Sonia Pujol, Ph.D.]
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*[http://www.spl.harvard.edu/pages/People/nicole Nicole Aucoin, M.Sc.]
  
 
== Tentative Agenda  ==
 
== Tentative Agenda  ==
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*8:00-8:30 am Computer setup assistance by the instructors
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*8:00-8:25 am Computer setup assistance by the instructors
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*8:30-8:35 am Welcome and presentation of day activities
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*8:25-8:30 am Welcome and presentation of day activities (Ron Kikinis)
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*8:35-9:00 am Introduction to NA-MIC and the Slicer community
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*8:30-10:00 am Hands-on session 1: [[media:Slicer3_DataLoadingAndVisualization_JHU2011_SoniaPujol.pdf‎ |Data Loading and 3D Visualization (Sonia Pujol)]]
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*9:00-10:15 am Hands-on session 1: Data Loading and 3D Visualization  
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*10:00-10:30 am Coffee Break
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*10:15-10:30 am Coffee Break
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*10:30-11:45 am Hands-on session 2: [[media:DiffusionMRITutorial_JHU2011_SoniaPujol.pdf| Diffusion Tensor Imaging Analysis (Sonia Pujol)]]
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*10:30-11:45 am Hands-on session 2: Diffusion Tensor Imaging Analysis
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*12:00-1:00 pm Institute for Computational Medicine, Distinguished Lecture Series: Ron Kikinis, MD: [[Events:JHU-2011-04-05|3D Slicer]] <br> Location: Hackerman Hall B17
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*12:00-1:00 pm Institute for Computational Medicine, Distinguished Lecture Series: Ron Kikinis, MD
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*1:00-1:30 pm Lunch
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*1:00-1:45 pm Lunch
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*1:30-2:30 pm Hands-on session 3: [[media:WhiteMatterExplorationNeurosurgicalPlanning_JHU2011_SoniaPujol.pdf‎ | Exploring peritumoral white matter fibers for neurosurgical planning (Sonia Pujol)]]
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*1:45-2:45 pm Hands-on session 3: Exploring peritumoral white matter fibers for neurosurgical planning
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*2:30-3:00 pm IGT session (Ron Kikinis)
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*2:45-3:45 pm IGT session
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**Demo of the OpenIGTLink simulator.
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*3:45-4:00 pm Coffee Break
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**How to connect your tracker to Slicer
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*4:00-4:15 pm Additional Slicer functionalities: Fiducials, 4D Imaging  
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**[http://www.slicer.org/slicerWiki/images/b/bc/OpenIGTLinkTutorial_Slicer3.6.2_JunichiTokuda_Dec2010.ppt OpenIGTLink Tutorial slides (ppt)].
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*4:15-4:30 pm Slicer4 update  
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**[http://wiki.slicer.org/slicerWiki/index.php/Modules:OpenIGTLinkIF-3.6-Simulators Link to the OpenIGTLink Data simulator].
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*4:30-5:00 pm Questions from the audience and concluding remarks
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*3:00-3:30 pm Coffee Break
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*3:30-4:00 pm Additional Slicer functionalities: [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Fiducials_TutorialContestSummer2010 Fiducials], [http://wiki.na-mic.org/Wiki/index.php/File:JHUWorkshopApril2011-4DUltrasoundSlides.tar.gz 4D Imaging] (Nicole Aucoin)
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*4:00-4:15 pm Slicer4 update (Ron Kikinis)
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*4:15-4:45 pm Questions from the audience and concluding remarks
  
 
== Logistics ==  
 
== Logistics ==  
 
*Date: April 5, 2011
 
*Date: April 5, 2011
 
*Location: Institute for Computational Medicine, Johns Hopkins University
 
*Location: Institute for Computational Medicine, Johns Hopkins University
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*'''Registration''': To sign-up for this event, please fill in the [[media:RegistrationForm_SlicerWorkshop_JHU_Apr5_2011.doc‎ | registration form]] and send it by e-mail to xxx (TBA).
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*'''Registration''': To sign-up for this event, please fill in the [[media:RegistrationForm_SlicerWorkshop_JHU_Apr5_2011.doc‎ | registration form]] and send it by e-mail to Kathryn Hayes (hayes at bwh.harvard.edu) before April 1st.
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== Room Configuration - Clark 314 ==
  
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24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power.
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[[Image:clark314_1.jpg|250px]]
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[[Image:clark314_2.jpg|250px]]
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[[Image:clark314_3.jpg|250px]]
  
 
== Preparations ==  
 
== Preparations ==  
  
 
*Hardware<span style="background-color: yellow"> The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.  
 
*Hardware<span style="background-color: yellow"> The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.  
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All participants are required to come with their own laptop computer and install the software and datasets prior to the event.</span>. A minimum of 1 GB of RAM (2 GB if possible) and a dedicated graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required.  
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All participants are required to come with their own laptop computer and install the software and datasets prior to the event.</span> A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.
  
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*Software installation: This workshop will use the '''Slicer3.6.3''' release version. The software will be posted on the wiki page of the workshop a few weeks before the event
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*Software installation: Please install the Slicer3.6.3 release version appropriate to the laptop computer you'll be bringing to the workshop
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*Datasets: We will post the tutorial datasets a few weeks before the event.
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* Windows: [http://www.na-mic.org/Slicer/Download/Release/win32/Slicer3-3.6.3-2011-03-04-win32.exe Slicer3-3.6.3-2011-03-04-win32.exe]
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* Linux 64: [http://www.na-mic.org/Slicer/Download/Release/linux-x86_64/Slicer3-3.6.3-2011-03-04-linux-x86_64.tar.gz Slicer3-3.6.3-2011-03-04-linux-x86_64.tar.gz]
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* Linux 32: [http://www.na-mic.org/Slicer/Download/Release/linux-x86/Slicer3-3.6.3-2011-03-04-linux-x86.tar.gz Slicer3-3.6.3-2011-03-04-linux-x86.tar.gz ]
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* Mac Darwin: [http://www.na-mic.org/Slicer/Download/Release/darwin-x86/Slicer3-3.6.3-2011-03-04-darwin-x86.tar.gz Slicer3-3.6.3-2011-03-04-darwin-x86.tar.gz ]
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*Datasets: Please download the [[media:Slicer3VisualizationDataset.zip | 3D Visualization dataset]],[[media:DiffusionDataset.zip| Diffusion dataset]], and [[media:WhiteMatterExplorationData.zip‎| White Matter Exploration dataset]] in preparation for the workshop.
  
 
== Slicer Community ==
 
== Slicer Community ==
 
Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer community]  prior to the workshop, for questions and feature requests related to the software.
 
Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer community]  prior to the workshop, for questions and feature requests related to the software.
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For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu).
  
 
== Slicer3 Training Survey ==
 
== Slicer3 Training Survey ==
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[http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey]   
 
[http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey]   
  
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Back to [http://www.na-mic.org/Wiki/index.php/Events NA-MIC Events]
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== Registrants ==
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# Kathleen Friel, PhD, Columbia University Medical Center
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# Joseph G. Hennessey, PhD, Johns Hopkins University
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# Paweena U-Thainual, Johns Hopkins University
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# Ann Majewicz, Johns Hopkins University
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# Nathan Cho, Johns Hopkins University
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# Seth Billings, Johns Hopkins University
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# Reza Seifabadi, MSc, Johns Hopkins University
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# Shoko Yoshida, MD, Johns Hopkins University
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# Chunwoo Kim, Johns Hopkins University
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# Siamak Ardekani, Johns Hopkins University
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# Michael Bowers, Johns Hopkins University
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# Ehsan Azimi, Johns Hopkins University
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# Tian Xia, Johns Hopkins University
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# Johnny Hsu, Johns Hopkins University
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# Piyawan Moonjaita, Johns Hopkins University
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 +
Back to [http://www.na-mic.org/Wiki/index.php/Events NA-MIC Events]

Latest revision as of 20:17, 9 August 2011

Home < Events: Johns Hopkins University Seminar April 2011
Jhu-logo.jpg
NAMIC.jpg Logo nac.gif NCIGTlogo.gif Catalyst logo final.jpg

Introduction

A one-day Slicer tutorial will be held at Johns Hopkins University on Tuesday, April 5, 2011. The primary objective of this event is to introduce users to the Slicer environment, with a particular focus on 3D modelling and Diffusion Tensor Imaging.

Faculty

Tentative Agenda

  • 3:00-3:30 pm Coffee Break
  • 3:30-4:00 pm Additional Slicer functionalities: Fiducials, 4D Imaging (Nicole Aucoin)
  • 4:00-4:15 pm Slicer4 update (Ron Kikinis)
  • 4:15-4:45 pm Questions from the audience and concluding remarks

Logistics

  • Date: April 5, 2011
  • Location: Institute for Computational Medicine, Johns Hopkins University
  • Registration: To sign-up for this event, please fill in the registration form and send it by e-mail to Kathryn Hayes (hayes at bwh.harvard.edu) before April 1st.

Room Configuration - Clark 314

24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power.

Clark314 1.jpg Clark314 2.jpg Clark314 3.jpg

Preparations

  • Hardware The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.

All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.

Slicer Community

Participants are invited to join the Slicer user and Slicer developer community prior to the workshop, for questions and feature requests related to the software.

For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu).

Slicer3 Training Survey

Click here to take the Slicer3 Training Survey

Registrants

  1. Kathleen Friel, PhD, Columbia University Medical Center
  2. Joseph G. Hennessey, PhD, Johns Hopkins University
  3. Paweena U-Thainual, Johns Hopkins University
  4. Ann Majewicz, Johns Hopkins University
  5. Nathan Cho, Johns Hopkins University
  6. Seth Billings, Johns Hopkins University
  7. Reza Seifabadi, MSc, Johns Hopkins University
  8. Shoko Yoshida, MD, Johns Hopkins University
  9. Chunwoo Kim, Johns Hopkins University
  10. Siamak Ardekani, Johns Hopkins University
  11. Michael Bowers, Johns Hopkins University
  12. Ehsan Azimi, Johns Hopkins University
  13. Tian Xia, Johns Hopkins University
  14. Johnny Hsu, Johns Hopkins University
  15. Piyawan Moonjaita, Johns Hopkins University

Back to NA-MIC Events

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