Projects:ARRA:SlicerEM:AtlasCreator:Groupwise

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Integration of Groupwise Registration in the AtlasCreator

Action Plan

• Step1 (until 04/01/11):
  • Daniel will get the code from Jeremy and dump it into our atlascreator/commandline directory
  • Daniel will compile the code under slicer - should you run into problems Jeremy is going to work on figuring them out with / for Daniel . If the code needs changes, Jeremy is responsible for implementing them
    • Daniel waits for the GIT repository from Jeremy
      • Then, run some tests provided by Jeremy
  • If Congeal doesn't compile cross platform then we could use the Slicer extension system as a backup
• Step 2 (until 04/01/11):
  • Daniel will write a wrapper to create Congeal config files by specifying command line arguments
    • Jeremy and Daniel will communicate if the "wrapper" fits Congeal's config needs and test the config files
  • File formats:
    • Congeal supports NIfTI-1 file format
    • Slicer does too :)
• Step 3 (until 04/06/11):
  • Daniel will modify the atlas creator so that he can access the wrapper
• Step 4 (until 08/04/11):
  • Daniel creates an advanced tab in our tool that makes some of the key parameter visible to user and modify the docu accordingly
  • Jeremy will give us a link or modify our wiki page with respect to the meaning of specific parameters , ....
• Step 5:
  • Be happy

Questions

• For all:
• For Kilian:
  • How does this effort coordinate with the integration of PCA? Which one has higher priority? (Daniel)
    • PCA will sit on top of this. This effort is an alternative to the registration stage. (Daniel after talking to Kilian)
• For Jeremy:
  • Please send the code after you are done cleaning up (Daniel)
• For Daniel: