Events: Johns Hopkins University Seminar April 2011

Introduction

A one-day Slicer tutorial will be held at Johns Hopkins University on Tuesday, April 5, 2011. The primary objective of this event is to introduce users to the Slicer environment, with a particular focus on 3D modelling and Diffusion Tensor Imaging.

Faculty

• Ron Kikinis, M.D.
• Sonia Pujol, Ph.D.
• Nicole Aucoin, M.Sc.

Tentative Agenda

• 8:00-8:25 am Computer setup assistance by the instructors
• 8:25-8:30 am Welcome and presentation of day activities (Ron Kikinis)
• 8:30-10:00 am Hands-on session 1: Data Loading and 3D Visualization (Sonia Pujol)
• 10:00-10:30 am Coffee Break
• 10:30-11:45 am Hands-on session 2: Diffusion Tensor Imaging Analysis (Sonia Pujol)
• 12:00-1:00 pm Institute for Computational Medicine, Distinguished Lecture Series: Ron Kikinis, MD: 3D Slicer
  Location: Hackerman Hall B17
• 1:00-1:30 pm Lunch
• 1:30-2:30 pm Hands-on session 3: Exploring peritumoral white matter fibers for neurosurgical planning (Sonia Pujol)
• 2:30-3:00 pm IGT session (Ron Kikinis)
  • Demo of the OpenIGTLink simulator.
  • How to connect your tracker to Slicer
  • OpenIGTLink Tutorial slides (ppt).
  • Link to the OpenIGTLink Data simulator.

• 3:00-3:30 pm Coffee Break
• 3:30-4:00 pm Additional Slicer functionalities: Fiducials, 4D Imaging (Nicole Aucoin)
• 4:00-4:15 pm Slicer4 update (Ron Kikinis)
• 4:15-4:45 pm Questions from the audience and concluding remarks

Logistics

• Date: April 5, 2011
• Location: Institute for Computational Medicine, Johns Hopkins University
• Registration: To sign-up for this event, please fill in the registration form and send it by e-mail to Kathryn Hayes (hayes at bwh.harvard.edu) before April 1st.

Room Configuration - Clark 314

24 port switch, wireless, two LCD projectors and screens, 6 power strips available for additional power.

Preparations

• Hardware The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.

All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.

• Software installation: Please install the Slicer3.6.3 release version appropriate to the laptop computer you'll be bringing to the workshop
• Windows: Slicer3-3.6.3-2011-03-04-win32.exe
• Linux 64: Slicer3-3.6.3-2011-03-04-linux-x86_64.tar.gz
• Linux 32: Slicer3-3.6.3-2011-03-04-linux-x86.tar.gz
• Mac Darwin: Slicer3-3.6.3-2011-03-04-darwin-x86.tar.gz

• Datasets: Please download the 3D Visualization dataset, Diffusion dataset, and White Matter Exploration dataset in preparation for the workshop.

Slicer Community

Participants are invited to join the Slicer user and Slicer developer community prior to the workshop, for questions and feature requests related to the software.

For questions related to the workshop, please send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu).

Slicer3 Training Survey

Click here to take the Slicer3 Training Survey

Registrants

1. Kathleen Friel, PhD, Columbia University Medical Center
2. Joseph G. Hennessey, PhD, Johns Hopkins University
3. Paweena U-Thainual, Johns Hopkins University
4. Ann Majewicz, Johns Hopkins University
5. Nathan Cho, Johns Hopkins University
6. Seth Billings, Johns Hopkins University
7. Reza Seifabadi, MSc, Johns Hopkins University
8. Shoko Yoshida, MD, Johns Hopkins University
9. Chunwoo Kim, Johns Hopkins University
10. Siamak Ardekani, Johns Hopkins University
11. Michael Bowers, Johns Hopkins University
12. Ehsan Azimi, Johns Hopkins University
13. Tian Xia, Johns Hopkins University
14. Johnny Hsu, Johns Hopkins University
15. Piyawan Moonjaita, Johns Hopkins University

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