Difference between revisions of "2011 Summer Project Week Shape Analysis UNC"

From NAMIC Wiki
Jump to: navigation, search
 
(15 intermediate revisions by 2 users not shown)
Line 2: Line 2:
 
<gallery>
 
<gallery>
 
Image:PW-SLC2011.png|[[2011_Winter_Project_Week#Projects|Projects List]]
 
Image:PW-SLC2011.png|[[2011_Winter_Project_Week#Projects|Projects List]]
−
Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
+
Image:SPHARMPDM_Logo.gif|SOME OUTPUTS: Triangular mesh representation of the input segmentation - The first triangular mesh,mapped in the sphere - Spherical representation of the harmonic representation of the input parameterization - DistanceMap colorMap(after MANCOVA) and Particle
−
Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
+
Image:MANCOVA.jpg|shapeAnalysisMANCOVA -- Pvalues
 +
Image:shapeAnalysisMANCOVA_Wizard-screenshot.png | shapeAnalysisMANCOVA_Wizard-screenshot
 +
 
 
</gallery>
 
</gallery>
  
 
==Key Investigators==
 
==Key Investigators==
−
* UNC: Lucile Bompard, Clement Vachet,Beatriz Paniagua,Martin Styner  
+
* UNC: Lucile Bompard, Clement Vachet, Beatriz Paniagua, Martin Styner  
−
* ......
+
* Utah: Josh Cates, Manasi Datar, Ross Whitaker
 +
 
 +
 
 +
The UNC shape analysis framework is an automatic shape correspondence methodology that uses spherical harmonics for sampling (SPHARM-PDM). ShapeAnalysisModule computes point-based models using a parametric boundary description. The point-based models computed with this tool are used to perform statistical studies (within shapeAnalysisMANCOVA) or to get correspondence point Models(within ParticleModule). The ParticleModule is already part of the ShapeAnalysisModule. You can choose to run it or not. Nevertheless, some triangulation of spherical harmonics are not preserved, not surprisingly.  
  
 
<div style="margin: 20px;">
 
<div style="margin: 20px;">
Line 14: Line 19:
  
 
<h3>Objective</h3>
 
<h3>Objective</h3>
−
The UNC shape analysis framework is an automatic approach employing sampled spherical harmonics (SPHARM-PDM). ShapeAnalysisModule computes point-based models using a parametric boundary description. The point-based models computed with this tool are used to perform statistical studies (within shapeAnalysisMANCOVA) or to get correspondence point Models(within ParticleModule). The goal is to improve the Particle Module. We need to find a way to be sure that the triangulations, we have at the end, are not flipped. That is to say, we have to know how to fix a template for the Particle study.
+
The goal is to improve the Particle Module. We need to set template population that not change their correspondence. That is to say, we have to know how to fix a template for the Particle study.
  
  
Line 23: Line 28:
  
 
<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
 +
Our plan for the project week is to:
 +
* Meet with all interested parties
 +
* Decided how we are going to fix the template 
 +
  
  
Line 30: Line 39:
  
 
<h3>Progress</h3>
 
<h3>Progress</h3>
−
shapeAnalysisMANCOVA_Wizard can be use either though command line or within Slicer and whatever the choise, the mrml scene will be displayed in Slicer3 at the end.  
+
 
−
The shapeAnalysisMANCOVA_Wizard's window is now resizable.
+
A template has been set.  
 +
We are still testing the improvement of this add on our results.
  
  
Line 41: Line 51:
 
==Delivery Mechanism==
 
==Delivery Mechanism==
  
−
This work will be delivered to the NA-MIC Kit as a  
+
This work will be delivered to the NAMIC Kit as a  
  
−
#ITK Module
+
#NITRIC distribution
 
#Slicer Module
 
#Slicer Module
 
##Built-in
 
##Built-in
 
##Extension -- commandline  YES
 
##Extension -- commandline  YES
 
##Extension -- loadable  YES
 
##Extension -- loadable  YES
−
#Other shapeAnalysisMANCOVA_Wizard
 

Latest revision as of 21:07, 23 June 2011

Home < 2011 Summer Project Week Shape Analysis UNC

  • SOME OUTPUTS: Triangular mesh representation of the input segmentation - The first triangular mesh,mapped in the sphere - Spherical representation of the harmonic representation of the input parameterization - DistanceMap colorMap(after MANCOVA) and Particle

  • shapeAnalysisMANCOVA -- Pvalues

  • shapeAnalysisMANCOVA_Wizard-screenshot

Key Investigators

  • UNC: Lucile Bompard, Clement Vachet, Beatriz Paniagua, Martin Styner
  • Utah: Josh Cates, Manasi Datar, Ross Whitaker


The UNC shape analysis framework is an automatic shape correspondence methodology that uses spherical harmonics for sampling (SPHARM-PDM). ShapeAnalysisModule computes point-based models using a parametric boundary description. The point-based models computed with this tool are used to perform statistical studies (within shapeAnalysisMANCOVA) or to get correspondence point Models(within ParticleModule). The ParticleModule is already part of the ShapeAnalysisModule. You can choose to run it or not. Nevertheless, some triangulation of spherical harmonics are not preserved, not surprisingly.

Objective

The goal is to improve the Particle Module. We need to set template population that not change their correspondence. That is to say, we have to know how to fix a template for the Particle study.


Approach, Plan

Our plan for the project week is to:

  • Meet with all interested parties
  • Decided how we are going to fix the template


Progress

A template has been set. We are still testing the improvement of this add on our results.


Delivery Mechanism

This work will be delivered to the NAMIC Kit as a

  1. NITRIC distribution
  2. Slicer Module
    1. Built-in
    2. Extension -- commandline YES
    3. Extension -- loadable YES
Retrieved from "https://www.na-mic.org/w/index.php?title=2011_Summer_Project_Week_Shape_Analysis_UNC&oldid=69072"