Difference between revisions of "2011 Summer Project Week DICOM RT"

From NAMIC Wiki
Jump to: navigation, search
 
(38 intermediate revisions by 3 users not shown)
Line 2: Line 2:
 
<gallery>
 
<gallery>
 
Image:PW-MIT2011.png|[[2011_Summer_Project_Week#Projects|Projects List]]
 
Image:PW-MIT2011.png|[[2011_Summer_Project_Week#Projects|Projects List]]
−
Image:notfound.png|Interesting picture to be added...
 
 
</gallery>
 
</gallery>
 +
 +
[[Image:sshot.png|300px|Synthetic noise]]
 +
 +
Synthetic DICOM-RT sample data [http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1865/random.zip]
  
 
==Key Investigators==
 
==Key Investigators==
Line 9: Line 12:
 
* Kitware: Luis Ibanez
 
* Kitware: Luis Ibanez
 
* Isomics: Steve Pieper
 
* Isomics: Steve Pieper
 +
* Cosmo software: Drew Wassem
 +
* A*STAR: Alexandre GOUAILLARD (in spirit)
 +
 +
'''Synthetic images, vector fields, RT structures and RT doses in Slicer and ITK'''
  
 
Figure out the best representation in ITK and Slicer4 for various RT and related datastructures.
 
Figure out the best representation in ITK and Slicer4 for various RT and related datastructures.
Line 15: Line 22:
  
 
<h3>Objective</h3>
 
<h3>Objective</h3>
−
Come away with a specific design and some sample code.
+
We are designing synthetic DICOM-RT dataset which includes CT image, structure set and dose distribution. The following guidelines are used. We measured the noise power spectrum of a real CT image and constructed synthetic image with exactly the same spectrum. Then we included "skin" and one internal spherical structure. Synthetic contours were generated and recorded in labelmap format. Synthetic dose distribution was generated in mha format.  
−
 
 
  
  
Line 24: Line 30:
  
 
<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
−
 
+
Currently synthetic DICOM-RT is loaded into Slicer 3.6.3 from file through Plastimatch extension DICOM/DICOM-RT Import. We plan to build Plastimatch command line module that will allow us to create synthetic image, structures and dose distribution interactively according to user's needs.
−
Review options and try some experiments.
 
−
 
 
  
 
</div>
 
</div>
Line 33: Line 37:
  
 
<h3>Progress</h3>
 
<h3>Progress</h3>
−
 
+
* Discussed the use of Slicer4 hierarchies to group structure sets
 +
* Reviewed DICOM networking interface with respect to RT workflows
 +
* Worked around resampling performance issues with itk vector images
  
  

Latest revision as of 14:02, 24 June 2011

Home < 2011 Summer Project Week DICOM RT

Synthetic noise

Synthetic DICOM-RT sample data [1]

Key Investigators

  • MGH: Nadya Shusharina, Greg Sharp
  • Kitware: Luis Ibanez
  • Isomics: Steve Pieper
  • Cosmo software: Drew Wassem
  • A*STAR: Alexandre GOUAILLARD (in spirit)

Synthetic images, vector fields, RT structures and RT doses in Slicer and ITK

Figure out the best representation in ITK and Slicer4 for various RT and related datastructures.

Objective

We are designing synthetic DICOM-RT dataset which includes CT image, structure set and dose distribution. The following guidelines are used. We measured the noise power spectrum of a real CT image and constructed synthetic image with exactly the same spectrum. Then we included "skin" and one internal spherical structure. Synthetic contours were generated and recorded in labelmap format. Synthetic dose distribution was generated in mha format.


Approach, Plan

Currently synthetic DICOM-RT is loaded into Slicer 3.6.3 from file through Plastimatch extension DICOM/DICOM-RT Import. We plan to build Plastimatch command line module that will allow us to create synthetic image, structures and dose distribution interactively according to user's needs.

Progress

  • Discussed the use of Slicer4 hierarchies to group structure sets
  • Reviewed DICOM networking interface with respect to RT workflows
  • Worked around resampling performance issues with itk vector images


References

Delivery Mechanism

This work will be delivered to the NAMIC Kit as a

  1. NITRIC distribution
  2. Slicer Module
    1. Built-in: perhaps RT support can become part of MRML
    2. Extension -- commandline: Maybe, if needed
    3. Extension -- loadable: yes, for a custom interface
Retrieved from "https://www.na-mic.org/w/index.php?title=2011_Summer_Project_Week_DICOM_RT&oldid=69328"