Difference between revisions of "CMF Workshop Cleveland"
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== Introduction == | == Introduction == | ||
This workshop will highlight the use of publicly available software for dental applications of 3D virtual models from Cone-beam CT volumes. The ability to visualize the face in 3D does not imply the ability to quantify growth or treatment changes. 3D structural shape analyses continue to mandate a multidisciplinary collaborative team including clinician researchers, shape analysis and statistical modeling experts. | This workshop will highlight the use of publicly available software for dental applications of 3D virtual models from Cone-beam CT volumes. The ability to visualize the face in 3D does not imply the ability to quantify growth or treatment changes. 3D structural shape analyses continue to mandate a multidisciplinary collaborative team including clinician researchers, shape analysis and statistical modeling experts. | ||
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==Tentative Agenda == | ==Tentative Agenda == | ||
| + | |||
| + | 9am - 10am USB delivery to attendees, data and software installation | ||
| + | |||
| + | 10am - 10.20am Lucia Cevidanes / Tung Nguyen: Overview of 3D imaging applications, future development goals. Slicer application development in Orthodontics. [https://na-mic.org/w/images/7/7e/Cleveland_CMF_overview.pdf (Slides)] | ||
| + | |||
| + | 10.20am -10.40am Beatriz Paniagua / Emerging methodologies in Image Analysis, NAMIC, NITRC [https://na-mic.org/w/images/e/ec/PaniaguaSlides.pdf (Slides)] | ||
| + | |||
| + | 10.40am - 11.00am DICOM conversion [https://na-mic.org/w/images/6/62/CONVERT_DICOM.pdf (Slides)], surface models [https://na-mic.org/w/images/3/3c/Construct_surface_models.pdf (Slides)] and visualization in ITKsnap | ||
| + | |||
| + | 11am - 11.20am Downsizing data [https://na-mic.org/w/images/7/70/ImaginePipelines.zip ImaginePipelines] | ||
| + | |||
| + | 11.20am - 12.00am Familiarization with ITKsnap segmentations | ||
| + | |||
| + | 12am - 1pm - LUNCH BREAK | ||
| + | |||
| + | 1pm - 2pm Complete segmentation | ||
| + | |||
| + | 2.00pm - 2.30pm CranialBase registration [https://na-mic.org/w/images/a/a2/Imagine_Downsizing_and_Registration.pdf (Slides)], Imagine vs CMFreg | ||
| + | |||
| + | 2.30pm - 3.00pm Surface models vs Image models, surface formats | ||
| + | |||
| + | 3.00pm - 3.30pm Slicer visualization, Slicer overview | ||
| + | |||
| + | 3.30pm - 4pm Quantification options, MeshValmet using Closest Points | ||
| + | |||
==Location== | ==Location== | ||
| − | Workshop will be held in | + | Workshop will be held in the [http://maps.google.com/maps?q=+11240+Bellflower+Road+Cleveland,+Ohio+44106&hl=en&sll=41.506766,-81.647962&sspn=0.068519,0.154152&vpsrc=0&hnear=11240+Bellflower+Rd,+Cleveland,+Ohio+44106&t=w&z=16 George S. Dively Building], in the Case Western Reserve University campus, Cleveland (OH) |
==Presenters== | ==Presenters== | ||
*Lucia Cevidanes, Ph.D. DDS, University of Michigan | *Lucia Cevidanes, Ph.D. DDS, University of Michigan | ||
| − | *Beatriz Paniagua, Ph.D., | + | *Tung Nguyen, DDS, University of North Carolina at Chapel Hill |
| + | *Beatriz Paniagua, Ph.D., University of North Carolina at Chapel Hill | ||
| + | |||
==Local host == | ==Local host == | ||
| + | |||
| + | Case Western Reserve University School of Dental Medicine, Cleveland (OH). | ||
| + | [http://dental.case.edu/faculty/hans.html Mark Hans, DDS, MSD] | ||
| + | |||
==Logistics == | ==Logistics == | ||
| − | * | + | * The registration for the workshop must be made in the [http://jceg2011.eventbrite.com/ Joint Cephalometric Experts Group 2011] website. |
==Preparation for the workshop == | ==Preparation for the workshop == | ||
*<span style="background-color: yellow"> The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. | *<span style="background-color: yellow"> The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers. | ||
All participants are required to come with their own laptop computer and install the software and datasets prior to the event.</span> A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance. | All participants are required to come with their own laptop computer and install the software and datasets prior to the event.</span> A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance. | ||
| − | *The | + | *Software |
| + | ** [http://www.itksnap.org/pmwiki/pmwiki.php ITKsnap] - Semi-automatic segmentation tool and visualization | ||
| + | **[http://www.slicer.org Slicer3] - Visualization and analysis tool | ||
| + | **[http://www.ia.unc.edu/dev/download/imagine/index.htm Imagine] - Registration tool | ||
| + | **[http://www.nitrc.org/projects/cmfreg CMF reg] - Slicer3 registration tool (under development) | ||
| + | *Data | ||
| + | **[https://na-mic.org/w/images/e/e8/Data_ITKsnap.zip ITKsnap segmentation] | ||
| + | **[https://na-mic.org/w/images/2/2a/Data_ImagineRegistration.zip Imagine registration] | ||
| + | **[https://na-mic.org/w/images/4/47/Data_Slicer3.zip Slicer3 visualization] | ||
| + | **[https://na-mic.org/w/images/b/b5/Data_MeshValmet.zip MeshValmet quantification] | ||
| + | ** [https://na-mic.org/w/images/6/6d/DemoSPHARM.zip data] for the demo in Shape Correspondence <br> | ||
| + | ** About the data: Pre and post corrective surgery CBCT (pre-V2, post-V8). The patient was diagnosed with a Class III malocclusion and the surgical procedure involved a mandibular retraction + maxillary advancement (The datasets will be also delivered to the attendees to the workshop using a USB storage device). | ||
| + | |||
| + | ==Other Resources== | ||
| + | *Information about CMFApp: CMF application software (CMFapp) developed M.E. Müller Institute for Surgical Technology and Biomechanics, University of Bern, Switzerland, under the funding of the Co-Me network, http://co-me.ch and available to us under a collaborative agreement. Contact [http://www.bioeng.master.unibe.ch/content/faculty__staff/lecturers_n_z/mauricio_reyes/index_eng.html MauricioReyes] and Hyungmin Kim (hyungmin.kim[at]artorg.unibe.ch). | ||
| + | *[http://www.nitrc.org/ Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)] | ||
| + | *[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed] | ||
| + | *[http://www.slicer.org/pages/UserOrientation Slicer user orientation] | ||
| + | *[https://www.slicer.org/wiki/Slicer_3.6:Training Slicer tutorials] | ||
| + | |||
== Slicer Community == | == Slicer Community == | ||
| − | Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer community] prior to the workshop, for questions and feature requests related to the software. | + | Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer community] prior to the workshop, for questions and feature requests related to the software. For questions related to the Slicer community, please send an e-mail to Sonia Pujol (spujol[at]bwh.harvard.edu) |
| − | For questions related to the workshop, please send an e-mail to | + | For questions related to the workshop, please send an e-mail to Lucia Cevidanes (cevidanl[at]dentistry.unc.edu), Beatriz Paniagua (beatriz_paniagua[at]med.unc.edu) or Tung Nguyen (nguyentu[at]dentistry.unc.edu). |
== Slicer3 Training Survey == | == Slicer3 Training Survey == | ||
[http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey] | [http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey] | ||
Latest revision as of 18:27, 10 July 2017
Home < CMF Workshop Cleveland
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Contents
Introduction
This workshop will highlight the use of publicly available software for dental applications of 3D virtual models from Cone-beam CT volumes. The ability to visualize the face in 3D does not imply the ability to quantify growth or treatment changes. 3D structural shape analyses continue to mandate a multidisciplinary collaborative team including clinician researchers, shape analysis and statistical modeling experts.
This 3D software workshop for Cranio Maxillo Facial applications is part of the Joint Cephalometric Experts Group 2011 that will be held from Wednesday, November 9, 2011 at 6:30 PM - Friday, November 11, 2011 at 12:00 PM (ET) at Cleveland, OH.
Date
- November 9, 2011 9am - 5.30pm
Tentative Agenda
9am - 10am USB delivery to attendees, data and software installation
10am - 10.20am Lucia Cevidanes / Tung Nguyen: Overview of 3D imaging applications, future development goals. Slicer application development in Orthodontics. (Slides)
10.20am -10.40am Beatriz Paniagua / Emerging methodologies in Image Analysis, NAMIC, NITRC (Slides)
10.40am - 11.00am DICOM conversion (Slides), surface models (Slides) and visualization in ITKsnap
11am - 11.20am Downsizing data ImaginePipelines
11.20am - 12.00am Familiarization with ITKsnap segmentations
12am - 1pm - LUNCH BREAK
1pm - 2pm Complete segmentation
2.00pm - 2.30pm CranialBase registration (Slides), Imagine vs CMFreg
2.30pm - 3.00pm Surface models vs Image models, surface formats
3.00pm - 3.30pm Slicer visualization, Slicer overview
3.30pm - 4pm Quantification options, MeshValmet using Closest Points
Location
Workshop will be held in the George S. Dively Building, in the Case Western Reserve University campus, Cleveland (OH)
Presenters
- Lucia Cevidanes, Ph.D. DDS, University of Michigan
- Tung Nguyen, DDS, University of North Carolina at Chapel Hill
- Beatriz Paniagua, Ph.D., University of North Carolina at Chapel Hill
Local host
Case Western Reserve University School of Dental Medicine, Cleveland (OH). Mark Hans, DDS, MSD
Logistics
- The registration for the workshop must be made in the Joint Cephalometric Experts Group 2011 website.
Preparation for the workshop
- The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.
All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory are required. Shared memory graphics boards have significantly poorer performance.
- Software
- Data
- ITKsnap segmentation
- Imagine registration
- Slicer3 visualization
- MeshValmet quantification
- data for the demo in Shape Correspondence
- About the data: Pre and post corrective surgery CBCT (pre-V2, post-V8). The patient was diagnosed with a Class III malocclusion and the surgical procedure involved a mandibular retraction + maxillary advancement (The datasets will be also delivered to the attendees to the workshop using a USB storage device).
Other Resources
- Information about CMFApp: CMF application software (CMFapp) developed M.E. Müller Institute for Surgical Technology and Biomechanics, University of Bern, Switzerland, under the funding of the Co-Me network, http://co-me.ch and available to us under a collaborative agreement. Contact MauricioReyes and Hyungmin Kim (hyungmin.kim[at]artorg.unibe.ch).
- Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)
- SPHARM-PDM publications in PubMed
- Slicer user orientation
- Slicer tutorials
Slicer Community
Participants are invited to join the Slicer user and Slicer developer community prior to the workshop, for questions and feature requests related to the software. For questions related to the Slicer community, please send an e-mail to Sonia Pujol (spujol[at]bwh.harvard.edu)
For questions related to the workshop, please send an e-mail to Lucia Cevidanes (cevidanl[at]dentistry.unc.edu), Beatriz Paniagua (beatriz_paniagua[at]med.unc.edu) or Tung Nguyen (nguyentu[at]dentistry.unc.edu).
