Difference between revisions of "2012 Winter Project Week:DTIAFA"

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Image:PW-SLC2011.png|[[2011_Winter_Project_Week#Projects|Projects List]]
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Image:DTIAFA1.jpg|DTIAtlasFiberAnalyzer - Top Screen
 
Image:DTIAFA1.jpg|DTIAtlasFiberAnalyzer - Top Screen
 
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==Key Investigators==
 
==Key Investigators==
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* UNC: Martin Styner, Clement Vachet, Yundi Shi, Benjamin Yvernault, Jean-Baptiste Berger
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* UNC: Jean-Baptiste Berger, Benjamin Yvernault, Yundi Shi, Clement Vachet, Martin Styner
  
 
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<h3>Objective</h3>
 
<h3>Objective</h3>
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DTIAtlasFiberAnalyzer aims to applies an atlas fiber to all datasets, extracts the fiber profiles, gathers and plot all the information.
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DTIAtlasFiberAnalyzer aims to map atlas fiber bundles to individual subjects, extract corresponding fiber profiles, gather and plot all related information (average FA map along fibers...). DTIAtlasFiberAnalyzer calls external applications, corresponding to individual steps or the framework, such as: dtitractstat, fiberprocess, and mergestatwithfiber. Once information are computed, each merged statistics on the fiber bundle can be displayed on 3D Slicer.
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This tool calls some others such as : dtitractstat, fiberprocess, and mergestatwithfiber. Once informations are computed, each merged statistics on the fiber can be watched on slicer.
 
  
 
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<h3>Approach, Plan</h3>
 
<h3>Approach, Plan</h3>
  
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Our plan for the project week is to try out this tool.
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Our plan for the project week is to test this tool on small datasets and meet with interested parties.
  
 
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<h3>Progress</h3>
 
<h3>Progress</h3>
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* Test on two different group of subject
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* Noticing a bug on dtitractstat
  
 
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Latest revision as of 15:18, 13 January 2012

Home < 2012 Winter Project Week:DTIAFA

  • DTIAtlasFiberAnalyzer - Top Screen

  • DTIAtlasFiberAnalyzer - Plot Window

Key Investigators

  • UNC: Jean-Baptiste Berger, Benjamin Yvernault, Yundi Shi, Clement Vachet, Martin Styner

Objective

DTIAtlasFiberAnalyzer aims to map atlas fiber bundles to individual subjects, extract corresponding fiber profiles, gather and plot all related information (average FA map along fibers...). DTIAtlasFiberAnalyzer calls external applications, corresponding to individual steps or the framework, such as: dtitractstat, fiberprocess, and mergestatwithfiber. Once information are computed, each merged statistics on the fiber bundle can be displayed on 3D Slicer.

Approach, Plan

Our plan for the project week is to test this tool on small datasets and meet with interested parties.

Progress

  • Test on two different group of subject
  • Noticing a bug on dtitractstat

Delivery Mechanism

This work will be delivered to the NA-MIC Kit as a

  1. Slicer Module
    1. Extension -- commandline
    2. Extension -- loadable

References

Retrieved from "https://www.na-mic.org/w/index.php?title=2012_Winter_Project_Week:DTIAFA&oldid=73655"