Latest revision as of 18:07, 10 July 2017

Home < Slicer-4.1

Target date for the code freeze is Monday. Feb. 27, 2012

Features and Responsibilities

Dicom widget: Steve
- cget (done)
- pop up reorganization (done)
- Lollipop (implemented and available for testing)
Charts: Jim
- Label statistics
compareviews and linking: Jim
- bugs 1526, 1598, 1495, 1583, 1607, 1632, 1631, 1686 (or a subset)
VTK GPU raycaster: J2
- linear ramp(resolved)
- crash in transfer function editor(resolved)
View controller cosmetics: J2
- redesign(resolved)
- mouse gesture for foreground/labelmap opacity (resolved)
Brainsfit cosmetics: Hans
- feature request
Extensions: JC
- Refine the mechanism to build/test/upload extensions.
- Provide support to extension developers so that the following extensions are built:
  - ABC, SkullStripper, EMSegmenter, VMTK, Plastimatch, DVH/SlicerRt
Documentation: JC
- Mechanism to easily "version" the documentation. (Easy creation of set of pages associated to release 4.1 from the pages prefixed with 4.0)
- NiceToHave:
  - Offline documentation: Mobile skin for webkit rendering of the slicer wiki documentation pages
PythonQt: JC
- Update CTK and Slicer to consider the contributed change to PythonQt
Annotation module bugs: drag and drop scrolling(resolved), deleting hierarchies(resolved), import(resolved), ruler (crash on scene load fixed by Jim's changes), crash on scene close(resolved) - Nicole
OpenIGTLink IF module: Junichi

Bug fixes targeted for this release

Sonia's reports on the DTI modules of the current Slicer4 release:

Mantis Bug Reports:
- Brain Mask (assigned to Demian, checked it out. It seems that it is a limitation of the Otsu strategy in this case due to the lack of padding, probably we need a real brain extraction tool)
- Color by Orientation (assigned to Demian fixed)
- Glyphs Visualization (assigned to Alex. fixed)
- Fiducials Seeding (assigned to Alex. fixed )
- Consistency of the GUI in the labelmap and fiducial seeding modules (assigned to Alex, fixed)
- Scalar Measurement computation issue (Planar measure) : wrong window and level values in the Volumes module ( assigned to Julien Finet) is due to extreme values in the data - can this be clamped in the scalar estimation module? (assigned to Demian, fixed)
- Scalar measurement update issue (fixed by Julien Finet)
- DTI pipeline Windows 32 crash (Marianna's test: Mantis bug report xxx]
- Scene Restore Issue in Slicer4 (assigned to: Jim)
Suggested Reorganization of the Diffusion menu (assigned to Demian, Done)
- Diffusion Data Conversion:
  - DICOM to Nrrd
  - DTIimport/export
- DWI:
  - Brain Mask
  - Tensor Estimation
  - Denoising
- DTI
  - Scalar Measurements
  - Tractography
  - Resample

'DicomToNrrdConverter' should be 'DICOM To NRRD Converter', and make the parameters of the Output sections visible on the GUI (assigned to Demian, done)

Use new Slicer4 QTtesting functionalities for cross-platform Tests of Iowa Workshop tutorials (Benjamin/Sonia)

Editor memory leaks and performance issues (Steve)

Mantis issue tracking for Slicer 4.1 target

Follow this link.

Deferred to after 4.1 freeze

Fix for texture resolution: Alex
- From Ron: for IGT need minimum 12Hz frame rate, maximum 200ms latency, preferred 30 hz frame rate and less than 100ms latency
Update screenshot to reflect all possible layouts bug 1662 - Nicole
storage nodes - Nicole

Is it realistic to try for SimpleITK in this release? (After discussion: no, needs more testing - aim for summer project week)
- Yes, if somebody can help with ITK 4 on windows.
- linux packaging issue:
  - (2) itkXXX.so files are missing in the Slicer package.
- linux discovering CLI:
  - (1) missing symbol on exit of CLI; in addition with a Qt bug, it fails to parse the CLI XML description
- possibly other issues on window (needs testing)
  - (3) Building SWIG for SimpleITK is the problem.
- need to try all the packaging platforms
  - packaging has never been tried on mac (J2 didn't try to compile on Mac neither)
  - packaging has never been tried on windows (because it doesn't compile)

	Build			Run			Package
Type	Windows	Linux	Mac	Windows	Linux	Mac	Windows	Linux	Mac
ITKv4 in Slicer	?	ok	?	?	no (1)	?	?	no (2)	?
SimpleITK in Slicer	no (3)	ok	?	?	no (1)	?	?	no (2)	?

Back to events page

@@ Line 3: / Line 3: @@
 =Features and Responsibilities=
 *Dicom widget: Steve
-**cget
+**cget (done)
-**pop up reorganization
+**pop up reorganization (done)
-**Lollipop
+**Lollipop (implemented and available for testing)
 *Charts: Jim
 **Label statistics
 *compareviews and linking: Jim
-**bugs 1526, 1598, 1495, 1583, 1607, 1632, 1631, 1686 (or a subset)
+**bugs [http://www.na-mic.org/Bug/view.php?id=1526 1526], [http://www.na-mic.org/Bug/view.php?id=1598 1598], [http://www.na-mic.org/Bug/view.php?id=1495 1495], [http://www.na-mic.org/Bug/view.php?id=1583 1583], [http://www.na-mic.org/Bug/view.php?id=1607 1607], [http://www.na-mic.org/Bug/view.php?id=1632 1632], [http://www.na-mic.org/Bug/view.php?id=1631 1631], [http://www.na-mic.org/Bug/view.php?id=1686 1686] (or a subset)
 *VTK GPU raycaster: J2
-**linear ramp, crash in transfer function editor
+**[http://www.na-mic.org/Bug/view.php?id=1612 linear ramp](resolved)
+**[http://na-mic.org/Mantis/view.php?id=1663 crash in transfer function editor](resolved)
 * View controller cosmetics: J2
-**[[2012_Project_Week:ViewerControls|Redesign drafts]]
+**[http://www.na-mic.org/Bug/view.php?id=1750 redesign](resolved)
-** Please consider notes here (not captured on the project wiki page, but we agreed on this redesign I think): [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.0/SlicerApplication/MouseandKeyboardShortcuts#Proposed_functionality]
+**[http://www.na-mic.org/Bug/view.php?id=1751 mouse gesture for foreground/labelmap opacity] ([https://www.slicer.org/wiki/Documentation/4.0/SlicerApplication/MouseandKeyboardShortcuts#Slice_Viewer resolved])
 *Brainsfit cosmetics: Hans
 **[http://na-mic.org/Mantis/view.php?id=1584 feature request]
@@ Line 27: / Line 28: @@
 * PythonQt: JC
 ** Update CTK and Slicer to consider the contributed change to PythonQt
-* Update screenshot to reflect all possible layouts - Nicole
+* Annotation module bugs: [http://www.na-mic.org/Bug/view.php?id=1712 drag and drop scrolling](resolved), [http://www.na-mic.org/Bug/view.php?id=1713 deleting hierarchies](resolved), [http://www.na-mic.org/Bug/view.php?id=1715 import](resolved), ruler (crash on scene load fixed by Jim's changes), [http://www.na-mic.org/Bug/view.php?id=1783 crash on scene close](resolved) - Nicole
-* Annotation module bugs: scrolling, deleting, import, ruler, storage nodes - Nicole
+*OpenIGTLink IF module: Junichi
 =Bug fixes targeted for this release=
@@ Line 34: / Line 35: @@
 * Mantis Bug Reports:
-** [http://www.na-mic.org/Bug/view.php?id=1722 Brain Mask] (assigned to Demian)
+** [http://www.na-mic.org/Bug/view.php?id=1722 Brain Mask] (assigned to Demian, checked it out. It seems that it is a limitation of the Otsu strategy in this case due to the lack of padding, probably we need a real brain extraction tool)
-** [http://www.na-mic.org/Bug/view.php?id=1679 Color by Orientation] (assigned to Demian)
+** [http://www.na-mic.org/Bug/view.php?id=1679 Color by Orientation] (assigned to Demian fixed)
 ** [http://www.na-mic.org/Bug/view.php?id=1678 Glyphs Visualization] (assigned to Alex. fixed)
 **[http://www.na-mic.org/Bug/view.php?id=1685 Fiducials Seeding ] (assigned to Alex. fixed )
-** [http://www.na-mic.org/Bug/view.php?id=1684 Consistency of the GUI in the labelmap and fiducial seeding modules] (assigned to Alex)
+** [http://www.na-mic.org/Bug/view.php?id=1684 Consistency of the GUI in the labelmap and fiducial seeding modules] (assigned to Alex, fixed)
-** [http://www.na-mic.org/Bug/view.php?id=1724 Scalar Measurement computation issue (Planar measure)] : wrong window and level values in the Volumes module ( assigned to Julien Finet)  iss due to extreme values in the data - can this be clamped in the scalar estimation module?
+** [http://www.na-mic.org/Bug/view.php?id=1724 Scalar Measurement computation issue (Planar measure)] : wrong window and level values in the Volumes module ( assigned to Julien Finet)  is due to extreme values in the data - can this be clamped in the scalar estimation module?  (assigned to Demian, fixed)
-** [http://www.na-mic.org/Bug/view.php?id=1725 Scalar measurement update issue]
+** [http://www.na-mic.org/Bug/view.php?id=1725 Scalar measurement update issue] (fixed by Julien Finet)
+** DTI pipeline Windows 32 crash (Marianna's test: Mantis bug report xxx]
-* Suggested Reorganization of the Diffusion menu (assigned to Demian)
+** [http://www.na-mic.org/Bug/view.php?id=1732 Scene Restore Issue in Slicer4] (assigned to: Jim)
+* Suggested Reorganization of the Diffusion menu (assigned to Demian, Done)
 **Diffusion Data Conversion:
 ***DICOM to Nrrd
@@ Line 55: / Line 57: @@
 *** Resample
-* 'DicomToNrrdConverter' should be 'DICOM To NRRD Converter', and make the parameters of the Output sections visible on the GUI (assigned to Demian)
+* 'DicomToNrrdConverter' should be 'DICOM To NRRD Converter', and make the parameters of the Output sections visible on the GUI (assigned to Demian, done)
+* Use new Slicer4 QTtesting functionalities for cross-platform [[Tests of Iowa Workshop tutorials]] (Benjamin/Sonia)
+* Editor memory leaks and performance issues (Steve)
-* Use new Slicer4 QTtesting functionalities for cross-platform testing of Iowa Workshop tutorials
+= Mantis issue tracking for Slicer 4.1 target =
+Follow this [http://www.na-mic.org/Bug/search.php?project_id=3&sticky_issues=on&target_version=Slicer+4.1.0&sortby=last_updated&dir=DESC&hide_status_id=80 link].
 = Deferred to after 4.1 freeze =
+* Fix for texture resolution: Alex
+** From Ron: for IGT need minimum 12Hz frame rate, maximum 200ms latency, preferred 30 hz frame rate and less than 100ms latency
+* Update screenshot to reflect all possible layouts [http://www.na-mic.org/Bug/view.php?id=1662 bug 1662] - Nicole
+* [http://www.na-mic.org/Bug/view.php?id=1717 storage nodes] - Nicole
 * Is it realistic to try for SimpleITK in this release?  (After discussion: no, needs more testing - aim for summer project week)
 ** Yes, if somebody can help with ITK 4 on windows.
@@ Line 90: / Line 102: @@
 !Mac
 |-
-| ITKv4
+| ITKv4 in Slicer
 |bgcolor="Orange" align="center"|?
 |bgcolor="LightGreen" align="center"|ok
@@ Line 101: / Line 113: @@
 |bgcolor="Orange" align="center"|?
 |-
-| SimpleITK
+| SimpleITK in Slicer
 |bgcolor="#f34a33" align="center"| no (3)
 |bgcolor="LightGreen" align="center"|ok

Difference between revisions of "Slicer-4.1"

Latest revision as of 18:07, 10 July 2017

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Features and Responsibilities

Bug fixes targeted for this release

Mantis issue tracking for Slicer 4.1 target

Deferred to after 4.1 freeze

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