Difference between revisions of "Tests of Iowa Workshop tutorials"

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Tag: 2017 source edit
 
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<table>
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[[Iowa 2012 Workshop Materials]]
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{| class="wikitable sortable labelpage labelpagetable" border="1" align="left"
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{| class="wikitable sortable labelpage labelpagetable" border="1"
 
|-
 
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|'''Tutorial Name'''||'''Tutorial Data'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Test Author & Comments/Mantis Links'''
 
|'''Tutorial Name'''||'''Tutorial Data'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Test Author & Comments/Mantis Links'''
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|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OS Lion || ||  ||
 
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OS Lion || ||  ||
 
|-
 
|-
−
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OS Snow Leopard || || ||
+
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OS Snow Leopard || 2012/03/18 ||2012-03-18 (r19639)    || Sonia. OK.
 
|-
 
|-
 
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 32 || ||  ||
 
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 32 || ||  ||
 
|-
 
|-
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|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows XP || || ||
+
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows XP || 2012-03-17 || 3/18.12 || Steve<br>Everything works except turning on glyphs after label map seeding, which results in a crash due to lack of memory.  Suggestion is to skip this step of the tutorial for users on win32.  Another option is to only segment a single slice of the corpus in order to generate fewer tracts.  Also it might help to delete the dwi volume after tensor estimation.  When I did these steps I was able to complete all steps of the tutorial.
 
|-
 
|-
 
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 || ||  ||
 
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 || ||  ||
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|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux 64 (debug) || ||  ||
 
|[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux 64 (debug) || ||  ||
 
|-
 
|-
−
|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux 64 (debug)|| r19517 || 03/07/2012 ||  
+
|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux 64 (debug)|| r19517 || 03/07/2012 ||  
 
Nicole: <s>[http://na-mic.org/Bug/view.php?id=1793 1793]</s>. <s>[http://na-mic.org/Bug/view.php?id=1795 1795]</s>
 
Nicole: <s>[http://na-mic.org/Bug/view.php?id=1793 1793]</s>. <s>[http://na-mic.org/Bug/view.php?id=1795 1795]</s>
 
|-
 
|-
−
|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package)|| r19577 || 03/13/2012 ||  
+
|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package)|| r19577 || 03/13/2012 ||  
 
Julien <br>pdf is 95MB !?!?<br>Page 22, Popup look is now different<br>Page 23, in red slice only the popup should still be up (didn't unpin)<br>Page 25: Diffusion Tensor Estimation has been renamed into DWI to DTI estimation<br>Page 25: dwi is already selected as Input DWI<br>Page 25: Minor Bug ! It stays "scheduled" for >5secs, not sure why<br>Page 26: Popup looks different now<br>Page 30: shouldn't labda1~labda2 >> lambda3 look more like a smarties ?<br>Page 32: typo connect ->connects<br>Page 36: Need to click on ">>" button first<br>Page 41: Bug ! After apply, the foreground image is reset to none, need to manually set it back to dti<br>Page 46: After selecting FractionalAnisotropy, Auto WL is automatically selected<br>Page 48: You might want to include screenshot of Link button again<br>Page 51: No need to move the mouse in 3D view, it automatically refreshes. If not, then a bug must be reported<br>Page 57: 1 bullet point has no . at the end(for information, there is no . in the other slides.<br>Page 60: Advice to use the right/left arrow keys to slice through?<br>Page 65: No axial slice displayed in 3D<br>Page 74: explain how to rename?<br>Page 78: explain to go to Annotation module again ?<br>Page 79: no need to turn off and on, it automatically refreshed when I placed the fiducial. If not, then a bug must be reported.<br>Page 81: explain where to place fiducial.<br>Page 82: Bug, it doesn't recompute automatically  
 
Julien <br>pdf is 95MB !?!?<br>Page 22, Popup look is now different<br>Page 23, in red slice only the popup should still be up (didn't unpin)<br>Page 25: Diffusion Tensor Estimation has been renamed into DWI to DTI estimation<br>Page 25: dwi is already selected as Input DWI<br>Page 25: Minor Bug ! It stays "scheduled" for >5secs, not sure why<br>Page 26: Popup looks different now<br>Page 30: shouldn't labda1~labda2 >> lambda3 look more like a smarties ?<br>Page 32: typo connect ->connects<br>Page 36: Need to click on ">>" button first<br>Page 41: Bug ! After apply, the foreground image is reset to none, need to manually set it back to dti<br>Page 46: After selecting FractionalAnisotropy, Auto WL is automatically selected<br>Page 48: You might want to include screenshot of Link button again<br>Page 51: No need to move the mouse in 3D view, it automatically refreshes. If not, then a bug must be reported<br>Page 57: 1 bullet point has no . at the end(for information, there is no . in the other slides.<br>Page 60: Advice to use the right/left arrow keys to slice through?<br>Page 65: No axial slice displayed in 3D<br>Page 74: explain how to rename?<br>Page 78: explain to go to Annotation module again ?<br>Page 79: no need to turn off and on, it automatically refreshed when I placed the fiducial. If not, then a bug must be reported.<br>Page 81: explain where to place fiducial.<br>Page 82: Bug, it doesn't recompute automatically  
 
|-
 
|-
−
|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows XP 32b || Slicer 4.1.0 rc1 (r19609) || 03/15/2012 ||
+
|-
 +
|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
 +
Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
 +
|-
 +
|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
 +
|-
 +
|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Jc - Work as expected
 +
|-
 +
|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows XP 32b || Slicer 4.1.0 rc1 (r19609) || 03/15/2012 ||
 
Julien <br>no link for the data mentioned in the tutorial<br>No mention to what Slicer version the tutorial is compatible with<br>Page1: Slicer Logo is 4.0, does it mean it's compatible with 4.0 ? no<br>Page 10: I have 100modules (from log messages dialog CTRL+0)<br>Page 19: typo: appears in the 2D viewer'''s'''<br>Page 22: Add "fit image to window" icon<br>Page 41: Odd black pixels in fa volume (see email)<br>Page 58: Add arrow to indicates how to change to yellow layout ?<br>Page 60: icon of the draw tool ? I first used the paint tool instead<br>Page 64: no "Minimum Length", only "Minimum Path Length". Bug ? why "Maximum Length" is not also "Maximum Path Length" ?<br>Page 64: Bug: why only Integration Step Length is (mm) but not others?<br>Page 66: Click on "Glyph" -> Crash (Slicer= 690Mo)
 
Julien <br>no link for the data mentioned in the tutorial<br>No mention to what Slicer version the tutorial is compatible with<br>Page1: Slicer Logo is 4.0, does it mean it's compatible with 4.0 ? no<br>Page 10: I have 100modules (from log messages dialog CTRL+0)<br>Page 19: typo: appears in the 2D viewer'''s'''<br>Page 22: Add "fit image to window" icon<br>Page 41: Odd black pixels in fa volume (see email)<br>Page 58: Add arrow to indicates how to change to yellow layout ?<br>Page 60: icon of the draw tool ? I first used the paint tool instead<br>Page 64: no "Minimum Length", only "Minimum Path Length". Bug ? why "Maximum Length" is not also "Maximum Path Length" ?<br>Page 64: Bug: why only Integration Step Length is (mm) but not others?<br>Page 66: Click on "Glyph" -> Crash (Slicer= 690Mo)
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
−
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Mac OS Lion || || ||
+
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Mac OS Lion || version from tutorial page || March 19 || Steve<br>Tested solution modules with sample data and all looked good.
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
−
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Windows 7 32 || || ||
+
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Windows 7 64  || version from tutorial page || March 19 || Steve<br>Tested solution modules with sample data and all looked good.
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
−
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset]|| Windows XP || || ||
+
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset]|| Windows XP 32 || version from tutorial page || March 19 || Steve<br>Tested solution modules with sample data and all looked good.
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
−
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Linux Ubuntu 64|| Slicer4.1rc1 || 03/16/2012 ||
+
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Linux Ubuntu 64|| Slicer4.1rc1 || 03/19/2012 ||
 
Benjamin <br> p3 : Image has no link with this tutorial <br> p16 : The Directory HelloPython has two sub directories "code" and "data". Wrong path. <br> p21 : Add comment to warn the user about the indentation <br> p17 : Slicer layout change compare to the previous screenshot <br>  p31 : We are not able to copy properly the text <br> p35 : helloPython sript path is ".../helloPython/code/" <br> p36: word "can" is written twice, and I already have 3 items in the sub menu "Exemples" <br> p48: The Directory HelloPython has two sub directories "code" and "data". Wrong path. <br> p50: Slicer layout change compare to the previous screenshot <br> p55: The last line should be on 1 line, or warn the user who may not know how work Python. <br> p59: Same as p48 and  p16 <br> p61: Slicer layout change compare to the previous screenshot <br> p62: More explanation maybe - Up/Down - Left/Right - ?
 
Benjamin <br> p3 : Image has no link with this tutorial <br> p16 : The Directory HelloPython has two sub directories "code" and "data". Wrong path. <br> p21 : Add comment to warn the user about the indentation <br> p17 : Slicer layout change compare to the previous screenshot <br>  p31 : We are not able to copy properly the text <br> p35 : helloPython sript path is ".../helloPython/code/" <br> p36: word "can" is written twice, and I already have 3 items in the sub menu "Exemples" <br> p48: The Directory HelloPython has two sub directories "code" and "data". Wrong path. <br> p50: Slicer layout change compare to the previous screenshot <br> p55: The last line should be on 1 line, or warn the user who may not know how work Python. <br> p59: Same as p48 and  p16 <br> p61: Slicer layout change compare to the previous screenshot <br> p62: More explanation maybe - Up/Down - Left/Right - ?
 +
|-
 +
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
 +
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Linux Ubuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
 +
Benjamin - Work as expected
 +
|-
 +
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
 +
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
 +
Benjamin - Work as expected
 +
|-
 +
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
 +
||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || MacOSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
 +
Jc - Work as expected
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
Line 42: Line 63:
 
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|-
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
−
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Mac OS SnowLeopard || || ||
+
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Mac OS SnowLeopard || 2012.03.18|| 2012.03.18 || Sonia. OK
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
Line 48: Line 69:
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
−
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Windows 7 32 || || ||
+
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Windows 7 64|| 4.1.0-rc1-2012-03-17 r19637 || March 19 || Julien<br>Page 13: Background is already correctly set<br>Page 14: circle on screenshot where to change current volume to "BaselineVolume" (DTIVolume selected by default) (+ typo, it's "BaselineVolume" not "Baseline Volume")<br>Page 24: You might want to mention that Grow Cut works in 3D<br>Page 31: grow cut button circle is off<br>Page 39: I don't have the axial slice visible in 3D view<br>Page 40: Didn't understand why positioning the mouse in the cystic part<br>Page 46: Give description for "Output Fiber Bundle"
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
−
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Windows XP || || ||
+
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Windows XP 32|| version from tutorial page || March 19 || Steve<br>Worked as expected
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
Line 58: Line 79:
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Linux 64 (debug) || ||  ||
 
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Linux 64 (debug) || ||  ||
 +
|-
 +
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 +
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Linux Ubuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Benjamin - worked as expected
 +
|-
 +
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 +
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Windows 7 (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 || Benjamin - worked as expected
 +
|-
 +
|[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
 +
||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Jc - worked as expected
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization ]
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization ]
−
||[[media:‎3DVisualizationData.zip| 3D Visualization dataset]] || Mac OS SnowLeopard || ||  ||
+
||[[media:‎3DVisualizationData.zip| 3D Visualization dataset]] || Mac OS SnowLeopard || 2012-03-18 || 2012-03-18 (r19639) || Sonia. OK. Note: The Save Scene doesn't save the scene with the correction orientation e.g. if the user saves the scene with 3D viewer showing the 3D models in Superior orientation, the scene gets restore in Anterior orientation.
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
Line 66: Line 96:
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
−
||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Windows 7 32 || ||  ||
+
||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Windows 7 64 || ||  || Julien<br>Page 47: Opacity could have been set from the tree view directly (last column)<br>Page 55 is a double<br>Page 56: no mention to check the Slice Intersection checkbox<br>Page 67 is a doublon<br>
 +
|-
 +
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
 +
||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Windows XP 32 || 2012-03-17 || 3/18/12 || Steve<br> Everything worked as expected (32 bit windows build)
 +
|-
 +
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
 +
||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Linux 64 (debug) || ||  ||
 
|-
 
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|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
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||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Windows XP || || ||
+
||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Linux Ubuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
 +
Benjamin - No Crash <br> Loading Scene - Image are not scaled all the time in the Slice views (random)-
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
−
||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Linux Ubuntu 64 || || ||  
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||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
 +
Benjamin - No Crash <br> Loading Scene - Image are not scaled all the time in the Slice views (random)-
 
|-
 
|-
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
 
|[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
−
||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Linux 64 (debug) || || ||
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||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
 +
Jc - <br> Crash at exit during the first part but can't reproduce <br> Loading Scene - Image are not scaled all the time in the Slice views (random)-
 
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* [http://www.na-mic.org/Wiki/index.php/Slicer-4.1 Back to Slicer4.1 Feb 27 page]
 
* [http://www.na-mic.org/Wiki/index.php/Slicer-4.1 Back to Slicer4.1 Feb 27 page]

Latest revision as of 19:23, 11 April 2023

Home < Tests of Iowa Workshop tutorials

Iowa 2012 Workshop Materials

Tutorial Name Tutorial Data Platform Slicer Version Test Date Test Author & Comments/Mantis Links
Slicer4.1 DTI Tutorial Diffusion Data Mac OS Lion
Slicer4.1 DTI Tutorial Diffusion Data Mac OS Snow Leopard 2012/03/18 2012-03-18 (r19639) Sonia. OK.
Slicer4.1 DTI Tutorial Diffusion Data Windows 7 32
Slicer4.1 DTI Tutorial Diffusion Data Windows XP 2012-03-17 3/18.12 Steve
Everything works except turning on glyphs after label map seeding, which results in a crash due to lack of memory. Suggestion is to skip this step of the tutorial for users on win32. Another option is to only segment a single slice of the corpus in order to generate fewer tracts. Also it might help to delete the dwi volume after tensor estimation. When I did these steps I was able to complete all steps of the tutorial.
Slicer4.1 DTI Tutorial Diffusion Data Linux Unbuntu 64
Slicer4.1 DTI Tutorial Diffusion Data Linux 64 (debug)
Slicer4 DTI Tutorial Diffusion Data Linux 64 (debug) r19517 03/07/2012

Nicole: 1793. 1795

Slicer4 DTI Tutorial Diffusion Data Windows 7 64b (package) r19577 03/13/2012

Julien
pdf is 95MB !?!?
Page 22, Popup look is now different
Page 23, in red slice only the popup should still be up (didn't unpin)
Page 25: Diffusion Tensor Estimation has been renamed into DWI to DTI estimation
Page 25: dwi is already selected as Input DWI
Page 25: Minor Bug ! It stays "scheduled" for >5secs, not sure why
Page 26: Popup looks different now
Page 30: shouldn't labda1~labda2 >> lambda3 look more like a smarties ?
Page 32: typo connect ->connects
Page 36: Need to click on ">>" button first
Page 41: Bug ! After apply, the foreground image is reset to none, need to manually set it back to dti
Page 46: After selecting FractionalAnisotropy, Auto WL is automatically selected
Page 48: You might want to include screenshot of Link button again
Page 51: No need to move the mouse in 3D view, it automatically refreshes. If not, then a bug must be reported
Page 57: 1 bullet point has no . at the end(for information, there is no . in the other slides.
Page 60: Advice to use the right/left arrow keys to slice through?
Page 65: No axial slice displayed in 3D
Page 74: explain how to rename?
Page 78: explain to go to Annotation module again ?
Page 79: no need to turn off and on, it automatically refreshed when I placed the fiducial. If not, then a bug must be reported.
Page 81: explain where to place fiducial.
Page 82: Bug, it doesn't recompute automatically

Slicer4 DTI Tutorial Diffusion Data Windows 7 64b (package) 4.1.0-rc1-2012-03-17
r19637		 03/19/2012

Benjamin - Work as expected
Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories

Slicer4 DTI Tutorial Diffusion Data Linux Unbuntu 64 (package) 4.1.0-rc1-2012-03-17
r19635		 03/19/2012 Benjamin - Work as expected
Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
Slicer4 DTI Tutorial Diffusion Data Mac OSX 10.7 (package) 4.1.0-rc1-2012-03-17
r19635		 03/19/2012 Jc - Work as expected
Slicer4 DTI Tutorial Diffusion Data Windows XP 32b Slicer 4.1.0 rc1 (r19609) 03/15/2012

Julien
no link for the data mentioned in the tutorial
No mention to what Slicer version the tutorial is compatible with
Page1: Slicer Logo is 4.0, does it mean it's compatible with 4.0 ? no
Page 10: I have 100modules (from log messages dialog CTRL+0)
Page 19: typo: appears in the 2D viewers
Page 22: Add "fit image to window" icon
Page 41: Odd black pixels in fa volume (see email)
Page 58: Add arrow to indicates how to change to yellow layout ?
Page 60: icon of the draw tool ? I first used the paint tool instead
Page 64: no "Minimum Length", only "Minimum Path Length". Bug ? why "Maximum Length" is not also "Maximum Path Length" ?
Page 64: Bug: why only Integration Step Length is (mm) but not others?
Page 66: Click on "Glyph" -> Crash (Slicer= 690Mo)

HelloPython Tutorial HelloPythonDataset Mac OS Lion version from tutorial page March 19 Steve
Tested solution modules with sample data and all looked good.
HelloPython Tutorial HelloPythonDataset Windows 7 64 version from tutorial page March 19 Steve
Tested solution modules with sample data and all looked good.
HelloPython Tutorial HelloPythonDataset Windows XP 32 version from tutorial page March 19 Steve
Tested solution modules with sample data and all looked good.
HelloPython Tutorial HelloPythonDataset Linux Ubuntu 64 Slicer4.1rc1 03/19/2012

Benjamin
p3 : Image has no link with this tutorial
p16 : The Directory HelloPython has two sub directories "code" and "data". Wrong path.
p21 : Add comment to warn the user about the indentation
p17 : Slicer layout change compare to the previous screenshot
p31 : We are not able to copy properly the text
p35 : helloPython sript path is ".../helloPython/code/"
p36: word "can" is written twice, and I already have 3 items in the sub menu "Exemples"
p48: The Directory HelloPython has two sub directories "code" and "data". Wrong path.
p50: Slicer layout change compare to the previous screenshot
p55: The last line should be on 1 line, or warn the user who may not know how work Python.
p59: Same as p48 and p16
p61: Slicer layout change compare to the previous screenshot
p62: More explanation maybe - Up/Down - Left/Right - ?

HelloPython Tutorial HelloPythonDataset Linux Ubuntu 64 (package) 4.1.0-rc1-2012-03-17
r19635		 03/19/2012

Benjamin - Work as expected

HelloPython Tutorial HelloPythonDataset Windows 7 64b (package) 4.1.0-rc1-2012-03-17
r19637		 03/19/2012

Benjamin - Work as expected

HelloPython Tutorial HelloPythonDataset MacOSX 10.7 (package) 4.1.0-rc1-2012-03-17
r19635		 03/19/2012

Jc - Work as expected

HelloPython Tutorial HelloPythonDataset linux 64 (debug)
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Mac OS SnowLeopard 2012.03.18 2012.03.18 Sonia. OK
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Mac OS Lion
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Windows 7 64 4.1.0-rc1-2012-03-17 r19637 March 19 Julien
Page 13: Background is already correctly set
Page 14: circle on screenshot where to change current volume to "BaselineVolume" (DTIVolume selected by default) (+ typo, it's "BaselineVolume" not "Baseline Volume")
Page 24: You might want to mention that Grow Cut works in 3D
Page 31: grow cut button circle is off
Page 39: I don't have the axial slice visible in 3D view
Page 40: Didn't understand why positioning the mouse in the cystic part
Page 46: Give description for "Output Fiber Bundle"
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Windows XP 32 version from tutorial page March 19 Steve
Worked as expected
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Linux Ubuntu 64 4.1rc1 March 15 Steve - worked great - few content comments sent to Sonia
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Linux 64 (debug)
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Linux Ubuntu 64 (package) 4.1.0-rc1-2012-03-17
r19635		 03/19/2012 Benjamin - worked as expected
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Windows 7 (package) 4.1.0-rc1-2012-03-17
r19637		 03/19/2012 Benjamin - worked as expected
Neurosurgical Planning Tutorial Neurosurgical Planning dataset Mac OSX 10.7 (package) 4.1.0-rc1-2012-03-17
r19635		 03/19/2012 Jc - worked as expected
Data Loading and 3DVisualization 3D Visualization dataset Mac OS SnowLeopard 2012-03-18 2012-03-18 (r19639) Sonia. OK. Note: The Save Scene doesn't save the scene with the correction orientation e.g. if the user saves the scene with 3D viewer showing the 3D models in Superior orientation, the scene gets restore in Anterior orientation.
Data Loading and 3DVisualization 3D Visualization dataset Mac OS Lion
Data Loading and 3DVisualization 3D Visualization dataset Windows 7 64 Julien
Page 47: Opacity could have been set from the tree view directly (last column)
Page 55 is a double
Page 56: no mention to check the Slice Intersection checkbox
Page 67 is a doublon
Data Loading and 3DVisualization 3D Visualization dataset Windows XP 32 2012-03-17 3/18/12 Steve
Everything worked as expected (32 bit windows build)
Data Loading and 3DVisualization 3D Visualization dataset Linux 64 (debug)
Data Loading and 3DVisualization 3D Visualization dataset Linux Ubuntu 64 (package) 4.1.0-rc1-2012-03-17
r19635		 03/19/2012

Benjamin - No Crash
Loading Scene - Image are not scaled all the time in the Slice views (random)-

Data Loading and 3DVisualization 3D Visualization dataset Windows 7 64b (package) 4.1.0-rc1-2012-03-17
r19637		 03/19/2012

Benjamin - No Crash
Loading Scene - Image are not scaled all the time in the Slice views (random)-

Data Loading and 3DVisualization 3D Visualization dataset Mac OSX 10.7 (package) 4.1.0-rc1-2012-03-17
r19635		 03/19/2012

Jc -
Crash at exit during the first part but can't reproduce
Loading Scene - Image are not scaled all the time in the Slice views (random)-

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