Difference between revisions of "2013 Project Week:CARMA 2D Dilate"
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==Key Investigators== | ==Key Investigators== | ||
| − | Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod, Ross Whitaker | + | Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod, Ross Whitaker |
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| + | [[Image:CarmaAxialDilate2.png|thumb|center|Axial Dilation]] | ||
| + | The goal of this project is to implement a 2D dilate filter that can be used to extend the left atrium endo layer segmentation to the left atrium epicardium boundary. The filter will extend the endo layer segmentation in the desired slice direction by 4 pixels. LGE-MRI images will be used as inputs to the filter. The output of this filter is further used to obtain a segmentation of only the wall of the left atrium by subtracting the endo layer segmentation from the epi layer segmentation. The implementation of this filter in Slicer would complete another part of our workflow. | ||
| + | <div style="margin: 20px;"> | ||
| + | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
| + | <h3>Objective</h3> | ||
| + | #Port existing CARMA C++ code for 2D dilate filter to command-line Slicer module | ||
| + | #Test and Document Module | ||
| + | #Deploy in CARMA Extension Module | ||
| + | </div> | ||
| + | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
| + | <h3>Approach, Plan</h3> | ||
| + | We plan to implement this algorithm as a Slicer command-line module. We will use the existing Slicer Editor tool as part of our implementation. We will decide whether this module should use real world or pixel space while dilating the endo layer segmentation. | ||
| + | </div> | ||
| + | <div style="width: 27%; float: left; padding-right: 3%;"> | ||
| + | <h3>Progress</h3> | ||
| + | *[[DBP3:Utah:SlicerModuleAxialDilate|Completed]] | ||
</div> | </div> | ||
</div> | </div> | ||
Latest revision as of 18:17, 10 January 2013
Home < 2013 Project Week:CARMA 2D Dilate
Key Investigators
Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod, Ross Whitaker
The goal of this project is to implement a 2D dilate filter that can be used to extend the left atrium endo layer segmentation to the left atrium epicardium boundary. The filter will extend the endo layer segmentation in the desired slice direction by 4 pixels. LGE-MRI images will be used as inputs to the filter. The output of this filter is further used to obtain a segmentation of only the wall of the left atrium by subtracting the endo layer segmentation from the epi layer segmentation. The implementation of this filter in Slicer would complete another part of our workflow.
Objective
- Port existing CARMA C++ code for 2D dilate filter to command-line Slicer module
- Test and Document Module
- Deploy in CARMA Extension Module
Approach, Plan
We plan to implement this algorithm as a Slicer command-line module. We will use the existing Slicer Editor tool as part of our implementation. We will decide whether this module should use real world or pixel space while dilating the endo layer segmentation.
