Difference between revisions of "AHM 2013"

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[[image:PW-SLC2013.png|300px]]
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__NOTOC__
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Back to [[Events]]
  
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[[Image:PW-SLC2013.png|300px]] [[Image:H2013-Slicer2.png|270px]]
  
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Project Week is a hands on activity -- programming using the open source [[NA-MIC-Kit|NA-MIC Kit]], algorithm design, and clinical application -- that has become one of the major events in the NA-MIC, NCIGT, and NAC calendars. It is held in the summer at MIT, typically the last week of June, and a shorter version is held in Salt Lake City in the winter, typically the second week of January.  
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=Welcome to the web page for the 16th Project Week!=
 +
==Summary==
 +
The 16th Project Event was held on January 7-11 in Salt Lake City, UT, in conjunction with the 2013 NA-MIC AHM. It recorded 80 registered attendees, who worked on 54 projects. These attendees represented 17 academic sites and 4 companies.
  
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Active preparation begins 6-8 weeks prior to the meeting, when a kick-off teleconference is hosted by the NA-MIC Engineering, Dissemination, and Leadership teams, the primary hosts of this event.  Invitations to this call are sent to all na-mic members, past attendees of the event, as well as any parties who have expressed an interest in working with NA-MIC. The main goal of the kick-off call is to get an idea of which groups/projects will be active at the upcoming event, and to ensure that there is sufficient NA-MIC coverage for all. Subsequent teleconferences allow the hosts to finalize the project teams, consolidate any common components, and identify topics that should be discussed in breakout sessions. In the final days leading upto the meeting, all project teams are asked to fill in a template page on this wiki that describes the objectives and plan of their projects.
+
A [[Project_Events#Past_Project_Weeks|summary]] of all past Project Events.
 +
==Logistics==
 +
*Dates: January 7-11, 2013.
 +
*Location: Salt Lake City, UT.
  
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The event itself starts off with a short presentation by each project team, driven using their previously created description, and allows all participants to be acquainted with others who are doing similar work. In the rest of the week, about half the time is spent in breakout discussions on topics of common interest of subsets of the attendees, and the other half is spent in project teams, doing hands-on programming, algorithm design, or clinical application of NA-MIC kit tools. The hands-on activities are done in 10-20 small teams of size 3-5, each with a mix of experts in NA-MIC kit software, algorithms, and clinical.  To facilitate this work, a large room is setup with several tables, with internet and power access, and each team gathers on a table with their individual laptops, connects to the internet to download their software and data, and is able to work on their projects. On the last day of the event, a closing presentation session is held in which each project team presents a summary of what they accomplished during the week.
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== Introduction ==
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{| border="00" cellpadding="8" cellspacing="0"
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|-
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| rowspan="2" align="left" | '''This is the home page for the 2013 NA-MIC all hands meeting (AHM).''' NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.
  
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A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
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For information about the January 2013 project week, see below.
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= Dates.Venue.Registration =
 
  
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Please [[AHM_2013#Dates_Venue_Registration|click here for Dates, Venue, and Registration]] for this event.
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For information about Utah as a travel destination click [http://www.utah.com '''here'''].
 +
| style="background: #ebeced"  align="center"| [[Image:SLC.jpg|center|350px|View of the City]]
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|-
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| style="background: #ebeced"|The 2013 AHM, EAB and Project Week was held <br>'''January 7-11, 2013''', in '''Salt Lake City''', Utah.
 +
|}
  
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= [[AHM_2013#Agenda|'''AGENDA''']] and Project List=
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== Dates, Venue, Registration ==
 +
{|
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|align="left" style="width:60%"|
 +
'''Dates:'''
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* The All Hands Meeting and External Advisory Board Meeting will be held on '''Thursday, January 10th'''. 
 +
* Project Activities will be held rest of the week between '''Monday, January 7th and Friday, January 11th'''.
  
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Please:
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'''Registration:''' Please click [http://www.sci.utah.edu/namic2013.html '''here'''] to register online before '''January 3, 2013'''. All participants must pay a registration fee ('''$250''' for AHM only, and '''$550''' for AHM+Project Week), which covers our catering and facilities costs. 
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*  [[AHM_2013#Agenda|'''Click here for the agenda for AHM 2013 and Project Week''']].
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After 12/25/12 registration prices will increase by $100. Last call registrations after 1/1/13 will be increased by $200.
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*  [[#Projects|'''Click here to jump to Project list''']]
 
  
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=Background and Preparation=
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'''Venue:''' The venue for the meeting is the Marriott City Center, Salt Lake City, Utah. Please either call the hotel at +1-866-961-8700 (toll free) and mention the group code "sciscia" or book online [http://www.marriott.com/hotels/travel/slccc-salt-lake-city-marriott-city-center/?toDate=1/12/13&groupCode=SCISCIA&fromDate=1/6/13&app=resvlink  '''here''']. Please note that '''''we need attendees to use this hotel''''' in order not to incur additional charges for use of the conference rooms and keep registration fees low.  The group rate is $149/night + tax.
  
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A summary of all past NA-MIC Project Events is available [[Project_Events#Past|here]].
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|style="width:40%" |[[image:Marriott-floorplan.png|thumb |250px|'''Meeting Rooms:''' See [http://www.marriott.com/hotels/event-planning/floor-plans/slccc-salt-lake-city-marriott-city-center/ here] for the web version.]]
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|}
  
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Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week na-mic-project-week mailing list]
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== Agenda==
 +
{| border="1" cellpadding="5"
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|- style="background:#eeeeee; font-size:125%; color:#0063B6" align="center"
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| style="width:5%"| '''Time'''
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| style="width:15%" | '''Monday, January 7'''
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| style="width:15%" | '''Tuesday, January 8'''
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| style="width:15%" | '''Wednesday, January 9'''
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| style="width:35%" | '''Thursday, January 10 '''
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| style="width:15%" | '''Friday, January 11'''
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|-
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| style="background:#eeeeee; color:black"|
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| style="background:#ffffff; color:#522200"| '''[[2013_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Capitol BC)''</font>
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| style="background:#dbf3ff; color:#522200"| '''[[2013_Winter_Project_Week|Project Activities]] '''<br><font color="#44AA88">''(Capitol BC)''</font>
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| style="background:#dbf3ff; color:#522200"| '''[[2013_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Capitol BC)''</font>
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| style="background:#F2E5D3; color:#522200"| '''AHM''' <br><font color="#44AA88">''(Capitol ABC)''</font>, '''[http://wiki.na-mic.org/Wiki/index.php/2013_EAB EAB]'''<br>[[2013_Winter_Project_Week|Project Activities]]
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| style="background:#dbf3ff; color:#522200"|'''[[2013_Winter_Project_Week|Project Activities]] ''' <br><font color="#44AA88">''(Capitol BC)''</font>
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|-
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| style="background:#eeeeee; color:black"|'''7:30-8:00'''
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| style="background:#ffffff; color:black"|
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| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font>
 +
| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font>
 +
| style="background:#F2E5D3; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font>
 +
| style="background:#dbf3ff; color:black"| Breakfast <br><font color="#BB9933">''(Olympus A)''</font>
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|-
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| style="background:#eeeeee; color:black"|'''8:00-10:00'''
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| <br><font color="#9966cc"></font>
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|9-10am: Breakout Session: [[AHM2013-Performance_Evaluation_Tools|Performance Evaluation Tools]] <br><font color="#44AA88">''(Capitol B)''</font> <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Amethyst)''</font>
 +
|
 +
| '''8-8:05am:''' Welcome (Ron Kikinis) <br>
 +
'''8:05-9:15am:''' [[AHM_2013_alg_core_presentations | Algorithms Core: Update and Future Plans]] <br> '''9:20-9:55am:''' [[AHM_2013_Presentation_Fraunhofer_MEVIS | Recent Developments on Quantitative Multimodal Imaging at Fraunhofer MEVIS]]. Invited Speaker: Horst Hahn, PhD.<br>
 +
| style="background:#dbf3ff; color:#522200"|[[2013_Winter_Project_Week|9am: Project Presentations]]<br><font color="#44AA88">''(Capitol BC)''</font>
 +
|-
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| style="background:#eeeeee; color:black"|'''10:00-10:30'''
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| style="background:#ffffff; color:black"|
 +
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
 +
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
 +
| style="background:#F2E5D3; color:black"| Coffee <br>''(General area)''
 +
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
 +
|-
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| style="background:#eeeeee; color:black"|'''10:30-12:00'''
 +
|
 +
| <br><font color="#9966cc">Breakout Session: [[AHM2013-IGT|Image Guided Therapy]] <br> ''(Amethyst)''</font> <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Capitol A)''</font>
 +
|NA-MIC competitive renewal. <br> [[ClosedSession2013|Closed session for TRD PIs and core personnel]]<br><font color="#9966cc">''(Amethyst)''</font>
 +
| DBP Update and Future Plans<br> '''10:30-10:55am:''' TBI (Jack Van Horn, [[Media:NAMIC_AHM_2013.pdf‎|Slides]]) <br> '''10:55-11:20am:''' [[Media:20130110_IowaDBPProgress.pdf|Huntington's Disease]] (Hans Johnson) <br> '''11:20-11:45am:''' Head and Neck Cancer (Greg Sharp, [[Media:NAMIC-AHM-2013-01-Sharp.pdf|Slides]])  <br> '''11:45-12:10pm:''' Atrial Fibrillation (Rob MacLeod, [[Media:DBP-AF-AHM2013.pdf|Slides]]) <br> '''
 +
|
 +
|-
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| style="background:#eeeeee; color:black"|'''12:00-1:00''' 
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| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font>
 +
| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font> <br>
 +
| style="background:#dbf3ff; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font><br>
 +
| style="background:#F2E5D3; color:black"| Lunch <br><font color="#BB9933">''(Olympus A)''</font>
 +
| style="background:#dbf3ff; color:black"| Boxed Lunch and Adjourn <br><font color="#BB9933">''(Olympus A)''</font>
 +
|-
 +
| style="background:#eeeeee; color:black"|'''1:00-3:00'''
 +
| style="background:#dbf3ff; color:#522200"|[[2013_Winter_Project_Week|Project Presentations]]<br><font color="#44AA88">''(Capitol BC)''</font>
 +
|  <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Capitol A)''</font>  <br><br> [[AHM2013-PatientHierarchy|Breakout: Slicer Patient Hierarchy and DICOM Export]]<br> <font color="#44AA88">''(Amethyst)''</font>
 +
|'''DBP Team Meetings''' <br><font color="#44AA88">''(Capitol A)''</font> <br> '''1-2pm:''' [[DBP MGH Head and Neck Cancer]] <br>'''2-3pm:''' [[DBP Utah Atrial Fibrillation]]
 +
| '''1:15-2pm:'''  [[AHM2013-Engineering_Updates | Engineering Core: Updates and Future Plans]] <br> '''2-2:30pm''' [[Media:AHM-2013-Extensions.ppt| Extensions]] (Tina Kapur, Jim Miller, Csaba Pinter, Tamas Ungi, Andriy Fedorov) <br> '''2:30-3:00pm:''' [[Media:AHM2013_TrainingCore_SoniaPujol.pdf  | Outreach ]] (Sonia Pujol, Steve Pieper) <br>
 +
|
 +
|-
 +
| style="background:#eeeeee; color:black"|'''3:00-3:30'''
 +
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
 +
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
 +
| style="background:#dbf3ff; color:black"| Coffee <br>''(General area)''
 +
| style="background:#F2E5D3; color:black"| Coffee <br>''(General area)''
 +
| style="background:#ffffff; color:black"|
 +
|-
 +
| style="background:#eeeeee; color:black"|'''3:00-5:00'''
 +
|[[AHM2013-Extensions-Workshop|Breakout: Slicer Extensions for Developers]] <br> <font color="#44AA88">''(Capitol BC)''</font> <br>[[AHM2013-PyXNAT|Breakout: PyXNAT]] <br><font color="#44AA88">''(Capitol A)''</font> <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Amethyst)''</font>
 +
|3:15-4pm: Breakout Session: [[AHM2013-Real_World_DICOM|Real World DICOM]] <br><font color="#44AA88">''(Amethyst)'' <br> 4:15-5pm: [[AHM2013-Simple-ITK|Simple ITK Tutorial]]</font> <br> Amethyst <br> [[AHM2013-Robotics|Breakout: Agile Robotics]]<br> <font color="#44AA88">''(Capitol A)''</font>
 +
|'''DBP Team Meetings''' <br><font color="#44AA88">''(Capitol A)''</font> <br> '''3-4pm:''' [[DBP  UCLA Traumatic Brain Injury]] <br>'''4-5pm:''' [[DBP Iowa Huntington's Disease]]
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|'''3-4pm''': [[2013_EAB|EAB meeting]] (Core, Site, and DBP PIs to join) <br><font color="#9966cc">''(Olympus A)''</font><br> '''4-5pm:''' EAB closed session  <br><font color="#9966cc">''(Olympus A)''</font>
 +
| style="background:#ffffff; color:black"|
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|-
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| style="background:#eeeeee; color:black"|'''05:00-07:00'''
 +
| style="background:#dbf3ff; color:black"|
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| style="background:#dbf3ff; color:black"|
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| style="background:#dbf3ff; color:black"|
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| style="background:#F2E5D3; color:black"|'''6:00''' Optional: [http://www.murphysbarandgrillut.com/ Beer at Murphy's] (like last year)
 +
| style="background:#ffffff; color:black"|
 +
|}
  
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=Projects=
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==Registered Attendees==
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* [[2013_Project_Week_Template | Template for project pages]]
 
  
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==TBI==
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<big>'''NOTE:'''</big> <font color="maroon">The registered attendee list will be posted here by the organizers.  '''DO NOT''' add your name to this list yourself.</font>  To register, please click [http://www.sci.utah.edu/namic2013-registration.html here].
−
* [[4D DTI tractography in Slicer for TBI | Coregistration of structural and diffusion MRI towards 4D modeling of TBI]] (Bo Wang, Andrei Irimia, Micah Chambers, Jack Van Horn, Marcel Prastawa, Guido Gerig)
 
−
* [[Clinically oriented TBI connectivity analysis in Slicer]] (Andrei Irimia, Bo Wang, Micah Chambers, Jack Van Horn, Marcel Prastawa, Guido Gerig)
 
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* [[UKF Tractography in Slicer 4]] (Ryan Eckbo, Yogesh Rathi, Demian Wassermann, C.F Westin, Ron Kikinis)
 
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* [[4D DTI analysis via longitudinal modeling of tract diffusivities]] (Anuja Sharma, Bo Wang, Andrei Irimia, Micah Chambers, Jack Van Horn, Marcel Prastawa, Guido Gerig)
 
  
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==Atrial Fibrillation==
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As of 9:30 AM 1/2/2013
−
* [[2013_Project_Week:CARMA_Scar_Segmentation|Scar Identification (LiangJia Zhu, Yi Gao, Josh Cates, Rob MacLeod, Allen Tannenbaum)]]
 
−
* [[2013_Project_Week:CARMA_PV_Antrum_Cut|SLICER MODULE: PV Antrum Cut Filter (Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod)]]
 
−
* [[2013_Project_Week:CARMA_LA_Seg_Gopal|SLICER MODULE: Automated LA Segmentation by Gopal (Gopal Veni, Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod)]]
 
−
* [[2013_Project_Week:CARMA_2D_Dilate|SLICER MODULE: 2D Dilate Filter (Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod)]]
 
−
* [[2013_Project_Week:CARMA_PractialLASeg|SLICER WORKFLOW: Practical Manual LA Segmentation in Slicer (Salma Bengali, Greg Gardner, Alan Morris, Josh Cates, Rob MacLeod)]]
 
−
* [[2013_Project_Week:CARMA_RT_MRI|PROJECT PLANNING: Real Time MRI in Slicer with OpenIGT (Alan Morris, Ashvin George, Josh Cates, Rob MacLeod)]]
 
  
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==Slicer4 Extensions==
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# Michael Ackerman :: National Library of Medicine
−
* [[2013_Project_Week:DTIExtension|Diffusion Tensor Images processing tools as Slicer4 extensions (Francois Budin, Adrien Kaiser, Martin Styner)]]
+
# Nicole Aucoin :: Brigham and Women's Hospital
 +
# Stephen Aylward :: Kitware, Inc.
 +
# Kayhan Batmanghelich :: Massachusetts Institute of Technology
 +
# Salma Bengali :: University of Utah
 +
# Morry Blumenfeld :: General Electric
 +
# Francois Budin :: University of North Carolina
 +
# Joshua Cates :: University of Utah
 +
# German Cavelier :: NIH
 +
# Lucia Cevidanes :: University of Michigan
 +
# Laurent Chauvin :: Brigham and Women's Hospital
 +
# Adrian Dalca :: Massachusetts Institute of Technology
 +
# Manasi Datar :: University of Utah
 +
# Andriy Fedorov :: Harvard Medical School
 +
# Jean-Christophe Fillion-Robin :: Kitware, Inc.
 +
# Julien Finet :: Kitware, Inc.
 +
# James Fishbaugh :: University of Utah
 +
# Yi Gao :: Brigham and Women's Hospital
 +
# Greg Gardner :: University of Utah
 +
# Guido Gerig :: University of Utah
 +
# Jeffrey Grethe :: UCSD
 +
# Daniel Haehn :: Boston Children's Hospital
 +
# Horst Hahn :: Fraunhofer MEVIS, Bremen
 +
# Nobuhiko Hata :: Brigham and Women's Hospital
 +
# Luis Ibanez :: Kitware, Inc.
 +
# Khan Iftekahruddin :: Old Dominion University
 +
# Andrei Irimia :: UCLA
 +
# Chris Johnson :: University of Iowa
 +
# Hans Johnson :: University of Iowa
 +
# Adrien Kaiser :: University of North Carolina
 +
# Tina Kapur :: Brigham and Women's Hospital
 +
# Peter Karasev :: University of Alabama at Birmingham
 +
# Takahisa Kato :: Brigham and Women's Hospital
 +
# Ron Kikinis :: Brigham and Women's Hospital
 +
# Donna Kochis :: Kitware, Inc.
 +
# Ivan Kolesov :: University of Alabama at Birmingham
 +
# Sunil Kumar :: Washington University in St. Louis
 +
# Miki Kumekawa :: Chiba University
 +
# Rui Li :: General Electric
 +
# David Little :: UCLA
 +
# Bill Lorensen :: General Electric
 +
# Bradley Lowekamp :: National Library of Medicine
 +
# Rob MacLeod :: University of Utah
 +
# Matthew McCormick :: Kitware, Inc.
 +
# Alireza Mehrtash :: Brigham and Women's Hospital
 +
# James Miller :: General Electric
 +
# Alan Morris :: University of Utah
 +
# Sandy Napel :: Stanford University
 +
# Kazufumi Onuma :: Canon Inc.
 +
# Dirk Padfield :: General Electric
 +
# Beatriz Paniagua :: University of North Carolina
 +
# Steve Pieper :: Isomics, Inc.
 +
# Csaba Pinter :: Queen's University
 +
# Sonia Pujol :: Brigham and Women's Hospital
 +
# Adam Rankin :: Queen's University
 +
# James Ross :: Brigham and Women's Hospital
 +
# Raul San Jose Estepar :: Brigham and Women's Hospital
 +
# Anuja Sharma :: University of Utah
 +
# Gregory Sharp :: Massachusetts General Hospital
 +
# Dinggang Shen :: University of North Carolina
 +
# Nadya Shusharina :: Massachusetts General Hospital
 +
# Ramesh Sridharan :: Massachusetts Institute of Technology
 +
# Martin Styner :: University of North Carolina
 +
# Allen Tannenbaum :: University of Alabama at Birmingham
 +
# Matthew Toews :: Brigham and Women's Hospital
 +
# Junichi Tokuda :: Brigham and Women's Hospital
 +
# Tamas Ungi :: Queen's University
 +
# John Van Horn :: UCLA
 +
# Harini Veeraraghavan :: Memorial Sloan-Kettering Cancer Center
 +
# Gopalkrishna Veni :: University of Utah
 +
# Bo Wang :: University of Utah
 +
# Kevin Wang :: Princess Margaret Cancer Centre
 +
# Demian Wassermann :: Brigham and Women's Hospital
 +
# David Welch :: University of Iowa
 +
# Sandy Wells :: Brigham and Women's Hospital
 +
# Ross Whitaker :: University of Utah
 +
# Atsushi Yamada :: Brigham and Women's Hospital
 +
# Alexander Yarmarkovich :: Isomics, Inc.
 +
# Terry Yoo :: National Library of Medicine
 +
# Liangjia Zhu :: University of Alabama at Birmingham
  
−
==Huntington's Disease==
+
Please make sure that you are on the [http://public.kitware.com/cgi-bin/mailman/listinfo/na-mic-project-week NA-MIC Project Week mailing list].
−
* [[2013_Project_Week:QualityAssuranceModule|Quality assurance module enhancements]] (Dave Welch, Hans Johnson)
 
−
* [[2013_Project_Week:PythonModules|Slicer interface to add Python modules to Slicer environment]] (Dave Welch)
 
−
* [[2013_Project_Week:FastFiducialRegistrationModule|Fast fiducial registration module]] (Dave Welch, Nicole Aucoin)
 
−
* [[2013_Project_Week:4DShapeAnalysis | 4D shape analysis: application to HD]] (James Fishbaugh, Marcel Prastawa, Hans Johnson, Guido Gerig)
 
−
 
 
−
==Head and Neck Cancer==
 
−
* [[2013_Winter_Project_Week:MABS|Multi atlas-based segmentation]] (Sharp, Shusharina, Golland)
 
−
* [[2013_Winter_Project_Week:Hybrid_registration|Hybrid interactive-automatic registration]] (Shusharina, Sharp, Pieper)
 
−
* [[2013_Winter_Project_Week:PointSetRegistration|Constrained Point Set Registration]] (Kolesov, Karasev, Sharp, Tannenbaum)
 
−
* [[2013_Winter_Project_Week:InteractiveSegmentation|Interactive Segmentation and Supporting Utilities]] (Karasev, Kolesov, Tannenbaum)
 
−
 
 
−
==Stroke==
 
−
* [[2013_Project_Week:WMH_Segmentation_for_Stroke|White Matter Hyperintensity Segmentation in Stroke (Adrian Dalca, Ramesh Sridharan, Polina Golland)]]
 
−
* [[2013_Project_Week:Imaging_Genetic_for_Stroke|Imaging Genetics for Stroke (Adrian Dalca, Kayhan Batmanghelich, Polina Golland)]]
 
−
 
 
−
==Image-Guided Interventions==
 
−
* [[2013_Project_Week:UnitedSlicerIGTExtension|United SlicerIGT extension, repository, website]] (Tamas Ungi, Junichi Tokuda, Adam Rankin)
 
−
* [[2013_Project_Week:BRAINSFit_new_features|BRAINSFit in ITK4: extra functionality and testing for prostate MR registration (Andrey, Hans)]]
 
−
* [[2013_Project_Week:PkModeling_for_prostate_DCE_MRI|PkModeling for prostate DCE MRI (Jim, Andrey)]]
 
−
* [[2013_Winter_Project_Week_Gyne_Brachy|iGyne Needle Digitalization]] (Alireza Mehrtash, Csaba Pinter)
 
−
* [[2013_Project_Week:AbdominalNavigationModule|Abdominal navigation module (Junichi Tokuda, Atsushi Yamada)]]
 
−
* [[2013_Project_Week:MobileImageOverlay|Mobile image overlay augmented reality needle guidance]] (Adam Rankin, Tamas Ungi)
 
−
* [[2013_Project_Week:MRIAblation|Thermal monitoring tools for MRI-guided laser ablation therapy of brain tumor]] (Laurent Chauvin, Noby Hata, Hatsuho Mamata)
 
−
 
 
−
==Radiation Therapy==
 
−
* [[2013_Project_Week:DicomRtExport|SlicerRT: DICOM RT export]] (Kevin Wang, Greg Sharp, Csaba Pinter)
 
−
* [[2013_Project_Week:RtBeamGeometry|SlicerRT: Beam geometry widgets]] (Csaba Pinter, Greg Sharp)
 
−
 
 
−
==Medical Robotics==
 
−
* [[Configurable fiducial-based device to image registration]] (Junichi Tokuda)
 
−
* [[2013_Project_Week:RobotizedUltrasoundProbeFor3DVolumeReconstruction| Robotized Ultrasound Probe For 3D Volume Reconstruction]] (Laurent Chauvin, Junichi Tokuda, Noby Hata)
 
−
* [[2013_Project_Week:AgileMedicalRobot | Agile medical robotics development with Slicer: Case study with MRI compatible robot(Taka Kato, Atsushi Yamada, Noby Hata, Kazuhumi Onuma)]]
 
−
* [[2013_Project_Week:InvestigatingRoleOfOpenSourceInTranslationalResearch | Investigating role of open source in translational research (Miki Kumekawa)]]
 
−
 
 
−
==NA-MIC Kit Internals==
 
−
*[[2013_Project_Week:WebbasedAnatomicalTeachingFramework|Web-based anatomical teaching framework for mi2b2]] (Daniel Haehn, Steve Pieper, Sonia Pujol, Randy Gollub, Rudolph Pienaar, Ellen Grant)
 
−
*[[2013_Project_Week:ITKv4Default|ITKv4 Default in Superbuild]] - [http://www.na-mic.org/Bug/search.php?project_id=3&sticky_issues=on&sortby=last_updated&dir=DESC&hide_status_id=80&tag_string=ITKv4 Issues] (Matt McCormick, Luis Ibanez, Hans Johnson, Jc, Bill Lorensen, Bradley Lowekamp)
 
−
*[[2013_Project_Week:MarkupsModule|Slicer4 Markups Module]] (Nicole Aucoin)
 
−
*[[2013_Project_Week:ColorHierarchies|Slicer4 Color Hierarchies]] (Nicole Aucoin)
 
−
*[[2013_Project_Week:PatientHierarchy|Slicer4 Patient Hierarchy]] (Csaba Pinter, Andrey Fedorov, Nicole Aucoin, Steve Pieper)
 
−
*[[2013_Project_Week:ScalarBar|Slicer4 Scalar bar improvements]] (Kevin Wang, Nicole Aucoin Csaba Pinter)
 
−
*[[2013_Project_Week:CliMatlabInterface|Slicer4 CLI Matlab interface]] (Kevin Wang, Steve Pieper, Csaba Pinter)
 
−
*[[2013_Project_Week:PETStandardUptakeValueComputation| PET/CT SUV Module for Clinicians]] (Sonia Pujol, Markus Van Tol, Nicole Aucoin)
 
−
*[[2013_Project_Week:SelfTests|Slicer4 Self Test and Sample Data Refactor]] (Steve Pieper, Jim Miller, Jc)
 
−
*[[2013_Project_Week:SimplifyMRMLReference|Simplify MRML References]] - Issue [http://www.na-mic.org/Bug/view.php?id=2727 #2727] (Alex Yarmarkovich, Steve Pieper, Julien Finet ?, Jc ?)
 
−
*[[2013_Project_Week:SlicerIPythonIntegration|Integration of IPython]] (Jc, Hans Johnson, Dave Welch, Steve Pieper, Matt McCormick)
 
−
*[[2013_Project_Week:SlicerDebianPackage|Slicer Debian package]] (Jc, Dominique Belhachemi, Greg Sharp)
 
−
*[[2013_Project_Week:SimplifyRendererMouseInteraction|Simplify renderer window mouse interaction]] - Mailing list [http://slicer-devel.65872.n3.nabble.com/Left-mouse-button-changes-window-level-Is-it-good-tt4026815.html thread] (Csaba, Steve, Ron, Jc, Greg, Andriy)
 
−
*[[2013_Project_Week:SteeredRegistration|Interactive Registration for Image Guided Therapy]] (Dirk Padfield, Jim Miller, Steve Pieper, Kunlin Cao)
 
−
*[[2013_Project_Week:Threaded SimpleITK Modules|Threaded SimpleITK Modules]] (Brad Lowekamp, Steve Pieper)
 
−
*[[2013_Project_Week:Slicer Personal Cloud]] (Rui Li, Jim Miller)
 
−
*[[2013_Project_Week:XNATSlicer|XNATSlicer]] (Sunil Kumar, Dan Marcus, Steve Pieper, etc.)
 
−
*[[2013_Project_Week:PGP_Keysigning|PGP Keysigning]] (Matt McCormick, Luis Ibanez, Bradley Lowekamp)
 

Latest revision as of 15:51, 30 March 2017

Home < AHM 2013

Back to Events

PW-SLC2013.png H2013-Slicer2.png

Welcome to the web page for the 16th Project Week!

Summary

The 16th Project Event was held on January 7-11 in Salt Lake City, UT, in conjunction with the 2013 NA-MIC AHM. It recorded 80 registered attendees, who worked on 54 projects. These attendees represented 17 academic sites and 4 companies.

A summary of all past Project Events.

Logistics

  • Dates: January 7-11, 2013.
  • Location: Salt Lake City, UT.

Introduction

This is the home page for the 2013 NA-MIC all hands meeting (AHM). NA-MIC participants meet for a AHM once a year. The purpose of the AHM is to coordinate, discuss plans and report to NIH officers and the external advisory board (EAB). The external advisory board meets with the NA-MIC leadership immediately after the AHM. In parallel, NA-MIC is organizing a project week. These events, with the exception of the EAB meeting, are open to collaborators and potential collaborators.

For information about the January 2013 project week, see below.

For information about Utah as a travel destination click here.

View of the City
The 2013 AHM, EAB and Project Week was held
January 7-11, 2013, in Salt Lake City, Utah.

Dates, Venue, Registration

Dates:

  • The All Hands Meeting and External Advisory Board Meeting will be held on Thursday, January 10th.
  • Project Activities will be held rest of the week between Monday, January 7th and Friday, January 11th.

Registration: Please click here to register online before January 3, 2013. All participants must pay a registration fee ($250 for AHM only, and $550 for AHM+Project Week), which covers our catering and facilities costs. After 12/25/12 registration prices will increase by $100. Last call registrations after 1/1/13 will be increased by $200.

Venue: The venue for the meeting is the Marriott City Center, Salt Lake City, Utah. Please either call the hotel at +1-866-961-8700 (toll free) and mention the group code "sciscia" or book online here. Please note that we need attendees to use this hotel in order not to incur additional charges for use of the conference rooms and keep registration fees low. The group rate is $149/night + tax.

Meeting Rooms: See here for the web version.

Agenda

Time Monday, January 7 Tuesday, January 8 Wednesday, January 9 Thursday, January 10 Friday, January 11
Project Activities
(Capitol BC) 		Project Activities
(Capitol BC) 		Project Activities
(Capitol BC) 		AHM
(Capitol ABC), EAB
Project Activities 		Project Activities
(Capitol BC)
7:30-8:00 Breakfast
(Olympus A) 		Breakfast
(Olympus A) 		Breakfast
(Olympus A) 		Breakfast
(Olympus A)
8:00-10:00
9-10am: Breakout Session: Performance Evaluation Tools
(Capitol B)
Breakout: Agile Robotics
(Amethyst) 		8-8:05am: Welcome (Ron Kikinis)

8:05-9:15am: Algorithms Core: Update and Future Plans
9:20-9:55am: Recent Developments on Quantitative Multimodal Imaging at Fraunhofer MEVIS. Invited Speaker: Horst Hahn, PhD.

 9am: Project Presentations
(Capitol BC)
10:00-10:30 Coffee
(General area) 		Coffee
(General area) 		Coffee
(General area) 		Coffee
(General area)
10:30-12:00
Breakout Session: Image Guided Therapy
(Amethyst)
Breakout: Agile Robotics
(Capitol A) 		NA-MIC competitive renewal.
Closed session for TRD PIs and core personnel
(Amethyst) 		DBP Update and Future Plans
10:30-10:55am: TBI (Jack Van Horn, Slides)
10:55-11:20am: Huntington's Disease (Hans Johnson)
11:20-11:45am: Head and Neck Cancer (Greg Sharp, Slides)
11:45-12:10pm: Atrial Fibrillation (Rob MacLeod, Slides)
12:00-1:00 Lunch
(Olympus A) 		Lunch
(Olympus A)
Lunch
(Olympus A)
 Lunch
(Olympus A) 		Boxed Lunch and Adjourn
(Olympus A)
1:00-3:00 Project Presentations
(Capitol BC)
Breakout: Agile Robotics
(Capitol A)

Breakout: Slicer Patient Hierarchy and DICOM Export
(Amethyst) 		DBP Team Meetings
(Capitol A)
1-2pm: DBP MGH Head and Neck Cancer
2-3pm: DBP Utah Atrial Fibrillation 		1:15-2pm: Engineering Core: Updates and Future Plans
2-2:30pm Extensions (Tina Kapur, Jim Miller, Csaba Pinter, Tamas Ungi, Andriy Fedorov)
2:30-3:00pm: Outreach (Sonia Pujol, Steve Pieper)
3:00-3:30 Coffee
(General area) 		Coffee
(General area) 		Coffee
(General area) 		Coffee
(General area)
3:00-5:00 Breakout: Slicer Extensions for Developers
(Capitol BC)
Breakout: PyXNAT
(Capitol A)
Breakout: Agile Robotics
(Amethyst) 		3:15-4pm: Breakout Session: Real World DICOM
(Amethyst)
4:15-5pm: Simple ITK Tutorial
Amethyst
Breakout: Agile Robotics
(Capitol A) 		DBP Team Meetings
(Capitol A)
3-4pm: DBP UCLA Traumatic Brain Injury
4-5pm: DBP Iowa Huntington's Disease 		3-4pm: EAB meeting (Core, Site, and DBP PIs to join)
(Olympus A)
4-5pm: EAB closed session
(Olympus A)
05:00-07:00 6:00 Optional: Beer at Murphy's (like last year)

Registered Attendees

NOTE: The registered attendee list will be posted here by the organizers. DO NOT add your name to this list yourself. To register, please click here.

As of 9:30 AM 1/2/2013

  1. Michael Ackerman :: National Library of Medicine
  2. Nicole Aucoin :: Brigham and Women's Hospital
  3. Stephen Aylward :: Kitware, Inc.
  4. Kayhan Batmanghelich :: Massachusetts Institute of Technology
  5. Salma Bengali :: University of Utah
  6. Morry Blumenfeld :: General Electric
  7. Francois Budin :: University of North Carolina
  8. Joshua Cates :: University of Utah
  9. German Cavelier :: NIH
  10. Lucia Cevidanes :: University of Michigan
  11. Laurent Chauvin :: Brigham and Women's Hospital
  12. Adrian Dalca :: Massachusetts Institute of Technology
  13. Manasi Datar :: University of Utah
  14. Andriy Fedorov :: Harvard Medical School
  15. Jean-Christophe Fillion-Robin :: Kitware, Inc.
  16. Julien Finet :: Kitware, Inc.
  17. James Fishbaugh :: University of Utah
  18. Yi Gao :: Brigham and Women's Hospital
  19. Greg Gardner :: University of Utah
  20. Guido Gerig :: University of Utah
  21. Jeffrey Grethe :: UCSD
  22. Daniel Haehn :: Boston Children's Hospital
  23. Horst Hahn :: Fraunhofer MEVIS, Bremen
  24. Nobuhiko Hata :: Brigham and Women's Hospital
  25. Luis Ibanez :: Kitware, Inc.
  26. Khan Iftekahruddin :: Old Dominion University
  27. Andrei Irimia :: UCLA
  28. Chris Johnson :: University of Iowa
  29. Hans Johnson :: University of Iowa
  30. Adrien Kaiser :: University of North Carolina
  31. Tina Kapur :: Brigham and Women's Hospital
  32. Peter Karasev :: University of Alabama at Birmingham
  33. Takahisa Kato :: Brigham and Women's Hospital
  34. Ron Kikinis :: Brigham and Women's Hospital
  35. Donna Kochis :: Kitware, Inc.
  36. Ivan Kolesov :: University of Alabama at Birmingham
  37. Sunil Kumar :: Washington University in St. Louis
  38. Miki Kumekawa :: Chiba University
  39. Rui Li :: General Electric
  40. David Little :: UCLA
  41. Bill Lorensen :: General Electric
  42. Bradley Lowekamp :: National Library of Medicine
  43. Rob MacLeod :: University of Utah
  44. Matthew McCormick :: Kitware, Inc.
  45. Alireza Mehrtash :: Brigham and Women's Hospital
  46. James Miller :: General Electric
  47. Alan Morris :: University of Utah
  48. Sandy Napel :: Stanford University
  49. Kazufumi Onuma :: Canon Inc.
  50. Dirk Padfield :: General Electric
  51. Beatriz Paniagua :: University of North Carolina
  52. Steve Pieper :: Isomics, Inc.
  53. Csaba Pinter :: Queen's University
  54. Sonia Pujol :: Brigham and Women's Hospital
  55. Adam Rankin :: Queen's University
  56. James Ross :: Brigham and Women's Hospital
  57. Raul San Jose Estepar :: Brigham and Women's Hospital
  58. Anuja Sharma :: University of Utah
  59. Gregory Sharp :: Massachusetts General Hospital
  60. Dinggang Shen :: University of North Carolina
  61. Nadya Shusharina :: Massachusetts General Hospital
  62. Ramesh Sridharan :: Massachusetts Institute of Technology
  63. Martin Styner :: University of North Carolina
  64. Allen Tannenbaum :: University of Alabama at Birmingham
  65. Matthew Toews :: Brigham and Women's Hospital
  66. Junichi Tokuda :: Brigham and Women's Hospital
  67. Tamas Ungi :: Queen's University
  68. John Van Horn :: UCLA
  69. Harini Veeraraghavan :: Memorial Sloan-Kettering Cancer Center
  70. Gopalkrishna Veni :: University of Utah
  71. Bo Wang :: University of Utah
  72. Kevin Wang :: Princess Margaret Cancer Centre
  73. Demian Wassermann :: Brigham and Women's Hospital
  74. David Welch :: University of Iowa
  75. Sandy Wells :: Brigham and Women's Hospital
  76. Ross Whitaker :: University of Utah
  77. Atsushi Yamada :: Brigham and Women's Hospital
  78. Alexander Yarmarkovich :: Isomics, Inc.
  79. Terry Yoo :: National Library of Medicine
  80. Liangjia Zhu :: University of Alabama at Birmingham

Please make sure that you are on the NA-MIC Project Week mailing list.

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