Difference between revisions of "DBP3:Utah:SlicerModuleIsolatedConnected"

From NAMIC Wiki
Jump to: navigation, search
(Created page with '__NOTOC__ ===CARMA Isolated Connected Image Filter=== {| |[[Image:connectedThreshold.jpg|thumb|280px] |} ==Authors, Collaborators & Contact== * CARMA Center, University of Utah…')
 
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
__NOTOC__
 
__NOTOC__
===CARMA Isolated Connected Image Filter===
+
===CMR Toolkit Isolated Connected Image Filter===
  
 
{|
 
{|
|[[Image:connectedThreshold.jpg|thumb|280px]
+
|[[Image:isolatedConnected.jpg|thumb|280px|Left:Segmented Image, Center: Original Gated MRA Image]]
 
|}
 
|}
  
 
==Authors, Collaborators & Contact==
 
==Authors, Collaborators & Contact==
* CARMA Center, University of Utah: Alan Morris, Salma Bengali, Greg Gardner, Josh Cates, Rob MacLeod  
+
* CARMA Center, University of Utah: Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod  
  
 
<div style="margin: 20px;">
 
<div style="margin: 20px;">
Line 17: Line 17:
 
Type: CLI
 
Type: CLI
  
Category: CARMA
+
Category: Cardiac MRI Toolkit
  
 
</div>
 
</div>
Line 24: Line 24:
  
 
==Module Description==
 
==Module Description==
 
+
This module uses two seed points to segment an image. One seed point (fiducial) is placed within the region to be segmented, and the other is placed outside that region. Multiple seed points can be used as well. The lower threshold is given as an input by the user. The isolated connected image filter will find the isolating upper threshold. If no isolating threshold can be found then the segmentation will fail.
 
</div>
 
</div>
  
Line 32: Line 32:
  
 
===Examples, Use Cases & Tutorials===
 
===Examples, Use Cases & Tutorials===
*  
+
* This module is meant to be used for segmenting the entire endocardium region from a cardiac MRI or MRA image. It can also be used for segmentation of structures in other types of images.
  
 
===Quick Tour of Features and Use===
 
===Quick Tour of Features and Use===
  
 
The following are the inputs and outputs
 
The following are the inputs and outputs
 
+
* Input image
*  
+
* Output image
 +
* Lower threshold
 +
* Seed1: User placed fiducial/s inside the region to be segmented
 +
* Seed2: User placed fiducial/s outside the region to be segmented
  
 
</div>
 
</div>
Line 55: Line 58:
  
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
<div style="width: 27%; float: left; padding-right: 3%;">
 
== More Information ==
 
  
 
</div>
 
</div>
 
</div>
 
</div>

Latest revision as of 19:55, 29 July 2013

Home < DBP3:Utah:SlicerModuleIsolatedConnected

CMR Toolkit Isolated Connected Image Filter

Left:Segmented Image, Center: Original Gated MRA Image

Authors, Collaborators & Contact

  • CARMA Center, University of Utah: Salma Bengali, Alan Morris, Josh Cates, Rob MacLeod

General Information

Module Type & Category

Type: CLI

Category: Cardiac MRI Toolkit

Module Description

This module uses two seed points to segment an image. One seed point (fiducial) is placed within the region to be segmented, and the other is placed outside that region. Multiple seed points can be used as well. The lower threshold is given as an input by the user. The isolated connected image filter will find the isolating upper threshold. If no isolating threshold can be found then the segmentation will fail.

Usage

Examples, Use Cases & Tutorials

  • This module is meant to be used for segmenting the entire endocardium region from a cardiac MRI or MRA image. It can also be used for segmentation of structures in other types of images.

Quick Tour of Features and Use

The following are the inputs and outputs

  • Input image
  • Output image
  • Lower threshold
  • Seed1: User placed fiducial/s inside the region to be segmented
  • Seed2: User placed fiducial/s outside the region to be segmented

Development

Source code & documentation

The source code for this module can be found at the GitHub repository.