Difference between revisions of "Imaging in Neuroscience"
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*Nicole Aucoin, Brigham and Women's Hospital, Harvard Medical School | *Nicole Aucoin, Brigham and Women's Hospital, Harvard Medical School | ||
*Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School | *Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School | ||
| + | *Randy L. Gollub, Massachusetts General Hospital, Harvard Medical School | ||
| + | *P. Ellen Grant, Boston Children's Hospital, Harvard Medical School | ||
| + | *Daniel Haehn, Boston Children's Hospital, Harvard Medical School | ||
| + | *Nicolas Rannou, Boston Children's Hospital, Harvard Medical School | ||
| + | *Nathaniel A Reynolds, Massachusetts General Hospital, Harvard Medical School | ||
==Course Logistics== | ==Course Logistics== | ||
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==Agenda== | ==Agenda== | ||
| − | *11:30-12:00: The 3D Slicer open-source platform for image analysis and 3D visualization of medical image data | + | *11:30-12:00: The 3D Slicer open-source platform for image analysis and 3D visualization of medical image data (lecture) |
| − | *12:00-1:00: | + | *12:00-1:00: Slicer4 minute tutorial (hands-on session) and Diffusion tractography (demo) |
| + | |||
| + | [[Media:ImagingInNeuroscience_April8-3DSlicer_SoniaPujol.pdf | 3D Slicer course - Imaging in Neuroscience]] | ||
| + | |||
| + | <font color=red>Note: | ||
| + | * Slide page 37 (For those who downloaded the slide before Apr 7): "Load scene" menu is not available in the current version of 3D Slicer (version 4.2.2). Please choose "Add data" instead. | ||
| + | * Slide page 48: If the white matter surface does not appear, please select "hemisphelic_white_matter.vtk" and uncheck "Clip" (see the screenshot bellow). | ||
| + | [[Image:ImagingInNeuroscience_April8_Clipping.png|300px]] | ||
| + | |||
| + | </font> | ||
== Course Materials == | == Course Materials == | ||
| − | In preparation for the hands-on session, please download the 3D Slicer version 4.2.1 and the Slicer4 minute datasets. | + | In preparation for the hands-on session, please download the 3D Slicer release version 4.2.2-1 and the Slicer4 minute datasets. |
| + | |||
| + | [http://download.slicer.org 3D Slicer 4.x (blue download button)] | ||
| + | |||
| + | [https://www.slicer.org/wiki/File:Slicer4minute.zip Slicer4minute dataset (hands-on)] | ||
| + | |||
| + | [[media:Dti.zip |DTI dataset (demo)]] | ||
| + | |||
| + | Additional materials for learning more about 3D Slicer are available on the Slicer 101 page. | ||
Latest revision as of 17:53, 10 July 2017
Home < Imaging in NeuroscienceThe 3D Slicer software platform will be presented as part of the Harvard Catalyst course "Advanced Imaging: Imaging in Neuroscience" course organized by Dr. Randy Gollub
Course Faculty
- Junichi Tokuda, Brigham and Women's Hospital, Harvard Medical School (Presenter)
- Nicole Aucoin, Brigham and Women's Hospital, Harvard Medical School
- Sonia Pujol, Brigham and Women's Hospital, Harvard Medical School
- Randy L. Gollub, Massachusetts General Hospital, Harvard Medical School
- P. Ellen Grant, Boston Children's Hospital, Harvard Medical School
- Daniel Haehn, Boston Children's Hospital, Harvard Medical School
- Nicolas Rannou, Boston Children's Hospital, Harvard Medical School
- Nathaniel A Reynolds, Massachusetts General Hospital, Harvard Medical School
Course Logistics
Date: April 8, 2013, 11:30-12:00 Location: Sheraton Commander Hotel, Boston, MA
Agenda
- 11:30-12:00: The 3D Slicer open-source platform for image analysis and 3D visualization of medical image data (lecture)
- 12:00-1:00: Slicer4 minute tutorial (hands-on session) and Diffusion tractography (demo)
3D Slicer course - Imaging in Neuroscience
Note:
- Slide page 37 (For those who downloaded the slide before Apr 7): "Load scene" menu is not available in the current version of 3D Slicer (version 4.2.2). Please choose "Add data" instead.
- Slide page 48: If the white matter surface does not appear, please select "hemisphelic_white_matter.vtk" and uncheck "Clip" (see the screenshot bellow).
Course Materials
In preparation for the hands-on session, please download the 3D Slicer release version 4.2.2-1 and the Slicer4 minute datasets.
3D Slicer 4.x (blue download button)
Slicer4minute dataset (hands-on)
Additional materials for learning more about 3D Slicer are available on the Slicer 101 page.
