Difference between revisions of "2013 Summer Project Week:CARMA Visualization"
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* Utah: Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod | * Utah: Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod | ||
| + | [[File:Thresholded_example.png|thumb|center|300px|An example of a thresholded isosurface. Blue: Below threshold, Green: Above threshold.]] | ||
<div style="margin: 20px;"> | <div style="margin: 20px;"> | ||
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<h3>Approach, Plan</h3> | <h3>Approach, Plan</h3> | ||
| − | #Discuss with available Slicer experts on possible implementation of this feature | + | #Discuss with available Slicer experts on possible options for implementation of this feature |
#Integrate the feature into Slicer | #Integrate the feature into Slicer | ||
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<h3>Progress</h3> | <h3>Progress</h3> | ||
| − | + | We have discussed with Steve and Jim and have decided to write a loadable module in Slicer which will be able to display the regions of scar on the isosurface of the LA endocardium wall. Regions of scar will be colored using scalars stored in the .vtk model file. Thresholding of the model will involve rewriting the .vtk file and generating a new isosurface in Slicer. (See example of a thresholded isosurface above.) | |
</div> | </div> | ||
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==Delivery Mechanism== | ==Delivery Mechanism== | ||
| − | This work will be delivered to the NA-MIC Kit as a Slicer | + | This work will be delivered to the NA-MIC Kit as a Slicer loadable module. |
==References== | ==References== | ||
*[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP] | *[http://www.na-mic.org/Wiki/index.php/DBP3:Utah Utah DBP] | ||
Latest revision as of 14:16, 21 June 2013
Home < 2013 Summer Project Week:CARMA Visualization
Key Investigators
- Utah: Salma Bengali, Alan Morris, Brian Zenger, Josh Cates, Rob MacLeod
Objective
- The workflow at CARMA for generating fibrosis scores for patients involves creating an isosurface of the left atrium wall, with regions of scar overlaid. Thresholding of the isosurface is not currently possible in Slicer and we would like to explore if this feature could possibly be added to Slicer.
Approach, Plan
- Discuss with available Slicer experts on possible options for implementation of this feature
- Integrate the feature into Slicer
Progress
We have discussed with Steve and Jim and have decided to write a loadable module in Slicer which will be able to display the regions of scar on the isosurface of the LA endocardium wall. Regions of scar will be colored using scalars stored in the .vtk model file. Thresholding of the model will involve rewriting the .vtk file and generating a new isosurface in Slicer. (See example of a thresholded isosurface above.)
Delivery Mechanism
This work will be delivered to the NA-MIC Kit as a Slicer loadable module.
